Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30257
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 105 5e-24
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 53 5e-08
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 49 8e-07
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 49 8e-07
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 45 1e-05
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 43 5e-05
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 40 5e-04
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 38 0.002
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.70
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.70
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 28 1.2
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 2.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 3.8
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 3.8
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz... 26 5.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 26 6.6
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 25 8.7
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 8.7
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 105 bits (253), Expect = 5e-24
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 1/163 (0%)
Frame = +1
Query: 250 KGIVAAIMSKQYGHEQFISELVTKACVAILP-EKTTFNVDNVRVCKILGAGLLQSEVLSG 426
K I I SKQYG+E F+S+LV KA + +LP + + FNVDN+RV KI+G+ L S+V+ G
Sbjct: 161 KAIRTCISSKQYGNEDFLSDLVAKAILTVLPKDPSKFNVDNIRVVKIMGSSLYNSQVVKG 220
Query: 427 MVFRREVEGDVSSAKNAKIAVYSCPIDKXXXXXXXXXXXXXXMNY*TSVKEKNLYLKSRL 606
MVF RE EG V+ +K AK+AV+SCP+D K + ++S +
Sbjct: 221 MVFPREPEGTVTRSKEAKVAVFSCPLDISQTETKGTVLLHNAQEMLDFSKGEENLIESHI 280
Query: 607 KIFPTXXXXXXXXXXXXEIWALHFLNKYHYYGLSRLNSKFDIR 735
K LH+LN++ + R+ SKF++R
Sbjct: 281 KEIYDAGVRVVVTSGNVNDLVLHYLNRFEIL-VIRVPSKFELR 322
Score = 76.2 bits (179), Expect = 5e-15
Identities = 44/116 (37%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAKL+V A+Q Q+ E+GD NFV+V +G R+G+T EIA GYE AL
Sbjct: 79 HPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRMGLTPLEIAKGYEMALSHT 138
Query: 185 LEILPSLICNEIKDTKNIKEVTKVLLLLSCLNN-MVMNNSFLS-LSRKPVLQYYQK 346
+E+L + ++I+ ++ KE+ K + +C+++ N FLS L K +L K
Sbjct: 139 MEVLEEICADKIETVESEKELIKA--IRTCISSKQYGNEDFLSDLVAKAILTVLPK 192
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 52.8 bits (121), Expect = 5e-08
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALD- 178
EH AKL+V S+ QD E+GDGT V+VL+G G+ IADGYE+A
Sbjct: 86 EHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQV 145
Query: 179 --KCLEILPSLICNEIKDTKNIKEVTKVLL 262
K L+ + ++ ++T N+ K L
Sbjct: 146 AVKHLDAISDVVDFSPENTTNLFRSAKTSL 175
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 48.8 bits (111), Expect = 8e-07
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAK +V ++ QDAEVGDGT V+V +G GV++ I GY +A
Sbjct: 77 HPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLA 136
Query: 185 LEILPSLICN-EIKDTKNIKEVTKVLLLLSCLNNMVMNNS--FLSLSRKPVLQYYQKKLH 355
+ + + + ++ D ++++ + + ++ +NS F + VL Q+ L+
Sbjct: 137 VNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLN 196
Query: 356 LMLI 367
+I
Sbjct: 197 ENMI 200
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAK++V S QD E GDGT V++L+G + G+ + IA+ ++RA
Sbjct: 72 HPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFT 131
Query: 185 LEIL-PSLICNEIKDTKNI 238
++ + + + E+ D +++
Sbjct: 132 VDCMKENALAIELSDRESL 150
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 45.2 bits (102), Expect = 1e-05
Identities = 20/69 (28%), Positives = 37/69 (53%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
EHPA K++V +Q QD EVGDGT V++++ + + + I GY A+ +
Sbjct: 73 EHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIRE 132
Query: 182 CLEILPSLI 208
++ + ++
Sbjct: 133 AVKFMTDVL 141
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAK M+ ++ QD EVGDGT VI+L+G + + +++AL+
Sbjct: 72 HPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDA 131
Query: 185 LEILPSL 205
L I+ +
Sbjct: 132 LSIIDEI 138
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/87 (29%), Positives = 39/87 (44%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
++P A + A+ QD GDGT V +L G R G+ S I+DG+ A ++
Sbjct: 68 QNPTASCIAKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNE 127
Query: 182 CLEILPSLICNEIKDTKNIKEVTKVLL 262
L L S + D + + V K L
Sbjct: 128 ALTFLDSFKTDFEVDREVLLNVAKTSL 154
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/65 (32%), Positives = 31/65 (47%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
++ AAK++V S++QD EVGDGT V V + + I DGY A
Sbjct: 73 DNAAAKVLVNISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKT 132
Query: 182 CLEIL 196
++ L
Sbjct: 133 AIDAL 137
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +1
Query: 331 AILPEKTTFNVDNVRVCKILGAGLLQSEVLSGMVFRREVEGDVSSA-KNAKIAVYSCPID 507
A+L K + N+DN+++ KILG L S + G + + + + +NA I + + +D
Sbjct: 182 AVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMD 241
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.70
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +2
Query: 185 LEILPSLICNEIKDTKNIKEVTKVLLLLSCLNNMVMNNSFLSLS 316
+ +LP LI + K+ ++ + LL CL+N+ ++NS +SLS
Sbjct: 629 VSVLP-LIKDSAKNLLSVTDPESEYLLKQCLSNISLSNSVISLS 671
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.70
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -2
Query: 452 PSTSRLNTIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSSEMNCS 291
P TS + P +TSD +P PR + T +++ +S S ++ +TSS + S
Sbjct: 117 PYTSSVACFPYATSDAPNPIPR-GDSATSTSIAPTYSASDSSATTITSSSPSTS 169
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Frame = +2
Query: 221 KDTKNIKEVTKV---LLLLSCLNNMVMNNSFLSLSRKPVLQYYQKKLHLMLIMLEFAKF* 391
KD +NIK+ + LL CL ++ N S + +L + H++L + F
Sbjct: 933 KDIENIKDFSTSPFRTLLSECLGLLICNESSSLYYKLELLSSSEASNHMLLSLSVFRFSL 992
Query: 392 VLDCCNLRYFLEWYLD 439
LDC L+ + + + +
Sbjct: 993 TLDCPKLKAYEKQFFE 1008
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 117 NYSAWE*LPVKLLMDMREHLTNVWKSFLLS 206
NYS WE + + L +R L N KSF+L+
Sbjct: 559 NYSLWEAVGISLNYIVRNGLINSHKSFVLT 588
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 431 TIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSS 306
++P S S S + TLT S +V ++G+ A TSS
Sbjct: 304 SVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSS 345
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 431 TIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSS 306
++P S S S TLT S V F+G+ A TSS
Sbjct: 412 SVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSS 453
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 320 KPVLQYYQKKLHLMLIMLEFAKF*VLDCCNLRYFLEWYL 436
KP L Y ++ HL + + KF LD CN+ YF+ YL
Sbjct: 140 KPTLLYTNQRDHLDRLC-DQVKF-YLDQCNVEYFVAPYL 176
>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 143 SEIADGYERALDKCLEILPSLICNEIKDTKNIKEVTKVLLLLSCLNNMVMNNSFLSLSRK 322
S++ + + D +E L S NE+K+ N+ +V+ S L+ +SFLS+S
Sbjct: 310 SKLGEAMGFSEDYIVEALRSDENNEVKEAYNLLHENQVIQEKSHLSKSKRVDSFLSVS-P 368
Query: 323 PVLQYYQKKL 352
P Y +L
Sbjct: 369 PAFSEYTSEL 378
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/59 (32%), Positives = 31/59 (52%)
Frame = -2
Query: 467 AEETSPSTSRLNTIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSSEMNCS 291
A TS S+S L++ S +SP+ TLT S+L+ S ++ + TSS ++ S
Sbjct: 200 AAPTSTSSSYLSS-SSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS 257
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = -2
Query: 452 PSTSRLNTIPESTSDCNSPAPRILQTLTLSTLNVVFSGSIATQAFVTSS 306
PS+S+ + ST+D + I T++ + ++ ++SG+ T FV+SS
Sbjct: 108 PSSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYSGTSGT-TFVSSS 155
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +1
Query: 217 DKRHKKH*RSYKGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCK 384
D KK+ K +++ S+ Y + FI E+ T + +PE T V+ + CK
Sbjct: 38 DSSLKKNTAFMKRCKSSLTSENY--DSFIKEIKTLSLKKFIPEITAAIVEGMMKCK 91
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = -1
Query: 234 FFVSFISLQMREGRISRHLSSALSYPSAISLVV 136
FF + + + R +RH++S L+YP +I ++
Sbjct: 120 FFYTRDFPKFQSSRTARHITSLLTYPMSIGAIL 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,988
Number of Sequences: 5004
Number of extensions: 57825
Number of successful extensions: 212
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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