Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30257
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0362 + 33379489-33379624,33380161-33380423,33380524-333806... 82 4e-16
02_02_0253 - 8325437-8325628,8325705-8325779,8325933-8326037,832... 50 3e-06
06_03_0353 + 19810945-19810975,19811308-19811369,19811741-198118... 47 2e-05
04_04_0729 + 27612106-27612195,27612284-27612370,27612469-276125... 45 7e-05
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 44 1e-04
06_03_0477 - 21250811-21250981,21251261-21251374,21251447-212516... 44 2e-04
02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949 43 3e-04
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 41 0.001
06_03_1193 - 28298656-28298754,28299303-28299377,28299456-282995... 41 0.001
10_08_0620 - 19321612-19323237 38 0.006
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366... 29 5.2
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 5.2
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 28 6.9
06_03_1163 + 28100248-28100625 28 6.9
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 28 6.9
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 6.9
01_06_1446 - 37409074-37409783,37409896-37409986,37410645-374119... 28 9.1
>03_06_0362 +
33379489-33379624,33380161-33380423,33380524-33380670,
33380753-33380914,33381681-33381758,33382329-33382462,
33382702-33382774,33382852-33382929,33383002-33383124,
33383223-33383317,33383723-33383932,33384115-33384172,
33384268-33384333
Length = 540
Score = 82.2 bits (194), Expect = 4e-16
Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
Frame = +1
Query: 262 AAIMSKQYGHEQFISELVTKACVAILPEK-TTFNVDNVRVCKILGAGLLQSEVLSGMVFR 438
+A+ SKQ+G E + LV AC+ + P+ FNVDNVRV K+LG GL S V+ GMV +
Sbjct: 163 SAVASKQFGQEDILCPLVADACMQVCPKNPANFNVDNVRVAKLLGGGLHNSSVVRGMVLK 222
Query: 439 REVEGDVSSAKNAKIAVYSCPIDKXXXXXXXXXXXXXXMNY*TSVKEKNLYLKSRLKIFP 618
+ G + + AKIAV++ +D K + ++ +K
Sbjct: 223 NDAVGSIKRVEKAKIAVFAGGVDTSATETKGTVLIHSAEQLENYAKTEEAKVEELIKAVA 282
Query: 619 TXXXXXXXXXXXXEIWALHFLNKYHYYGLSRLNSKFDIR 735
ALHF +Y L R++SKF++R
Sbjct: 283 DSGAKVIVSGAAVGDMALHFCERYKLMVL-RISSKFELR 320
Score = 68.9 bits (161), Expect = 4e-12
Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)
Frame = +3
Query: 516 TETKGTVLIKSADELLNFSKGEESLLEKQIKDISDSGVKVIVAGAKFGDMGLTLLE*IPL 695
TETKGTVLI SA++L N++K EE+ +E+ IK ++DSG KVIV+GA GDM L E L
Sbjct: 249 TETKGTVLIHSAEQLENYAKTEEAKVEELIKAVADSGAKVIVSGAAVGDMALHFCERYKL 308
Query: 696 L-WAVPS*FQIR 728
+ + S F++R
Sbjct: 309 MVLRISSKFELR 320
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 2/94 (2%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
+HPAAK++VLA + Q E+GDG N I +G R+G+ SEI GY +A++K
Sbjct: 74 QHPAAKILVLAGRAQQEEIGDGANLTISFAGELLEKAEELIRMGLHPSEIIIGYTKAINK 133
Query: 182 CLEILPSLI--CNEIKDTKNIKEVTKVLLLLSCL 277
+EIL L+ +E D +N +EV VLL+ S +
Sbjct: 134 TVEILEDLVEKGSENMDVRNKEEV--VLLMRSAV 165
>02_02_0253 -
8325437-8325628,8325705-8325779,8325933-8326037,
8326249-8326374,8326451-8326835,8326931-8327208,
8327294-8327367,8327476-8327547,8327637-8327705,
8340132-8340201,8340806-8340873,8341571-8341643,
8341807-8341868,8342168-8342198
Length = 559
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/67 (40%), Positives = 34/67 (50%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAK M+ S+ QD EVGDGT VIVL+G + I Y +ALD
Sbjct: 74 HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAQAFIDKNYHPTVICRAYTKALDDA 133
Query: 185 LEILPSL 205
L +L +
Sbjct: 134 LSVLDKI 140
>06_03_0353 +
19810945-19810975,19811308-19811369,19811741-19811813,
19813292-19813359,19813496-19813565,19813908-19813976,
19814065-19814136,19814247-19814320,19814420-19814697,
19814804-19815188,19815268-19815393,19815583-19815687,
19815986-19815994,19817040-19817114,19817202-19817390
Length = 561
Score = 46.8 bits (106), Expect = 2e-05
Identities = 26/67 (38%), Positives = 34/67 (50%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAK M+ S+ QD EVGDGT VIVL+G + I Y +AL+
Sbjct: 74 HPAAKSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFIDKHYHPTVICRAYTKALEDA 133
Query: 185 LEILPSL 205
L +L +
Sbjct: 134 LAVLDKI 140
>04_04_0729 +
27612106-27612195,27612284-27612370,27612469-27612528,
27612554-27612688,27612769-27612864,27613149-27613214,
27613647-27613864,27614093-27614189,27614605-27614691,
27614892-27615026,27615121-27615225,27615717-27615845,
27615925-27616028,27616598-27616688,27616774-27616857
Length = 527
Score = 44.8 bits (101), Expect = 7e-05
Identities = 20/54 (37%), Positives = 31/54 (57%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGY 163
EHPAAK++V +++QD EVGDGT V++++ R + + I GY
Sbjct: 25 EHPAAKVLVELAELQDREVGDGTTSVVIIAAELLKRGNDLVRNKIHPTSIISGY 78
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALD 178
++PAAK++V S++QD EVGDGT V+VL+G + + I GY A++
Sbjct: 70 DNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGYRMAVE 128
>06_03_0477 -
21250811-21250981,21251261-21251374,21251447-21251613,
21252051-21252153,21252315-21252367,21252438-21252570,
21252835-21253183,21253685-21254003,21254519-21254717
Length = 535
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/57 (40%), Positives = 31/57 (54%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERA 172
++ AKLMV S QD E+GDGT V+V++G G+ IA+GYE A
Sbjct: 80 DNQIAKLMVELSCSQDYEIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRIAEGYELA 136
>02_02_0739 - 13560241-13560622,13561192-13561239,13563727-13564949
Length = 550
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +2
Query: 8 PAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCL 187
PAA+++ S+ QDA GDGT V+VL+G G + AD R + +
Sbjct: 80 PAARMLAELSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHRLATRAV 139
Query: 188 EILPSL-ICNEIKDTKNI 238
E+L ++ I E+ D ++
Sbjct: 140 EVLHAMAIPIELSDRDSL 157
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/31 (58%), Positives = 26/31 (83%)
Frame = +2
Query: 2 EHPAAKLMVLASQMQDAEVGDGTNFVIVLSG 94
++PAAK++V S++QD EVGDGT V+VL+G
Sbjct: 71 DNPAAKVLVDISKVQDDEVGDGTTSVVVLAG 101
>06_03_1193 -
28298656-28298754,28299303-28299377,28299456-28299544,
28299679-28299760,28300385-28300474,28300557-28300655,
28300733-28300852,28300968-28301084,28301174-28301309,
28301415-28301584,28301744-28301947,28302032-28302157,
28302841-28303101,28303215-28303229
Length = 560
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 5 HPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKC 184
HPAAK++V ++ QD+EVGDGT V++L+ GV + Y A
Sbjct: 76 HPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPYIEDGVHPHSLIRSYRTAGHLA 135
Query: 185 LEILPSLICN-EIKDTKNIKEV 247
+E + L + E K + KE+
Sbjct: 136 IEKVKDLATSIEGKSLEEKKEL 157
>10_08_0620 - 19321612-19323237
Length = 541
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 8 PAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCL 187
PAA+++ S+ QDA GDGT V+VL+G G + AD + +
Sbjct: 84 PAARMLADLSRSQDAAAGDGTTTVVVLAGSLLRRAQSLLSAGAHPTAAADALHLLAARAV 143
Query: 188 EIL 196
E+L
Sbjct: 144 EVL 146
Score = 29.5 bits (63), Expect = 3.0
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Frame = +1
Query: 250 KGIVAAIMSKQYG-HEQFISELVTKACVAILPEKTTFNVD--NVRVCKILGAGLLQSEVL 420
K A+ SK + +S L A +A++ + +D ++RV K LG + +E++
Sbjct: 163 KSASTALNSKVVSQYSTLLSPLAVDAALAVVDPAHPYLLDLRDIRVVKKLGCTVDDTELI 222
Query: 421 SGMVFRRE---VEGDVSSAKNAKIAV 489
G+V ++ V G + +AKIAV
Sbjct: 223 RGLVLNKKASHVAGGPTRIGDAKIAV 248
>08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,
3661975-3662133,3662193-3662243,3662838-3663018,
3663102-3663228,3663322-3663431,3663529-3663667,
3663767-3663876,3664002-3664071,3664247-3664320,
3664458-3664553,3664682-3664777,3665041-3665168,
3665422-3665656,3665743-3665910,3666274-3666381,
3666468-3666617,3666905-3667015,3667118-3667297,
3667427-3667555,3667819-3667914,3668108-3668293,
3668431-3668603,3668720-3668921
Length = 1150
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 328 VAILPEKTTFNVDNVRVCKILGAGLLQSEVLSGMVFRREVEGDVSSAKNAKIAVYS 495
+AI E +T + NVRV ++ S+ ++G+ F + + VSS +A++ +S
Sbjct: 914 IAIGMEDSTIQIYNVRVDEVKSKLKGHSKKITGLAFSQSMNMLVSSGADAQLCAWS 969
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -1
Query: 282 LFRHDSSNNTFVTSLMFFVSFISLQMREGRISRHLSSALSYPSAIS 145
L+ HD+ T TS +SF ++M EG+ HL+ S P+A++
Sbjct: 1147 LYLHDNGVFTIATSNSSSLSFPGIEMEEGK-WHHLAVVHSKPNALA 1191
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 428 IPESTSDCNSPAPRILQTLTLSTLNVVFSGSIAT 327
+P+S C SP PR+ + T S + VFSG +++
Sbjct: 859 LPKSNGSCLSPIPRVQSSSTHSQTS-VFSGGLSS 891
>06_03_1163 + 28100248-28100625
Length = 125
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +1
Query: 268 IMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRV-CKILGAGLLQSEVLSGMVFRRE 444
+M+++ G E + EL + + + P D++R +LG G + + L GM+ +
Sbjct: 22 VMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAPLLGLGGMSDDDLRGMLAEGD 81
Query: 445 VEGD 456
+GD
Sbjct: 82 FDGD 85
>03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +1
Query: 328 VAILPEKTTFNVDNVRVCKILGAGLLQSEVLSGMVFRREVEGDVSSAKNAKIAVYS 495
+AI + +T + NVR+ ++ S+ ++G+ F + VSS +A+I V+S
Sbjct: 880 IAIGMDDSTIQIYNVRIDEVKSKLRGHSKKITGLAFSNVLNVLVSSGADAQICVWS 935
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 28.3 bits (60), Expect = 6.9
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 522 TKGTVLIKSADELLNFSK-GE--ESLLEKQIKDISDSGVKVIVAGAKFGD 662
TKG V SAD LL+ + GE E+ + ++ I DSG VI A GD
Sbjct: 732 TKGQVA--SADGLLDVQREGESKENTIRNWLRGIRDSGYNVIGLSASLGD 779
>01_06_1446 -
37409074-37409783,37409896-37409986,37410645-37411988,
37412062-37412709,37412801-37412852,37413141-37413214,
37414370-37414419,37414488-37414569,37414779-37414828,
37414907-37414949,37415030-37415110,37415198-37415243,
37415336-37415382,37415467-37415532,37415612-37415678,
37415761-37415858
Length = 1182
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 464 EETSPSTSRLNTIPESTSDCNSPAPRILQTLTLST 360
E S S N +P DC +P P I +T T+S+
Sbjct: 802 EVDSRSIPSNNLVPHRLPDCAAPKPNISETNTISS 836
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,912,748
Number of Sequences: 37544
Number of extensions: 331699
Number of successful extensions: 797
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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