Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30257
         (747 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)             102   4e-22
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                  54   9e-08
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   7e-07
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   7e-07
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)                   41   0.001
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.003
SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)                    30   2.3  
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  29   3.0  
SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)             29   3.0  
SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_20598| Best HMM Match : Herpes_UL49_2 (HMM E-Value=6.4)             29   4.0  
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)                      29   5.3  
SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_39288| Best HMM Match : efhand (HMM E-Value=0.00063)                28   9.2  

>SB_56828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 525

 Score =  102 bits (244), Expect = 4e-22
 Identities = 63/162 (38%), Positives = 87/162 (53%)
 Frame = +1

Query: 250 KGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCKILGAGLLQSEVLSGM 429
           K I  A+ SKQ    +  + +   + V+ILPEK TFNVDNVRV KILG+G+  SEV+ GM
Sbjct: 17  KAIKTAVSSKQIRSIKNDNNMRFSS-VSILPEKATFNVDNVRVAKILGSGIHNSEVVQGM 75

Query: 430 VFRREVEGDVSSAKNAKIAVYSCPIDKXXXXXXXXXXXXXXMNY*TSVKEKNLYLKSRLK 609
           VF++ VEGD++S K+ KIAV+SCP+D                   +  K +   L+ ++K
Sbjct: 76  VFKKGVEGDITSKKDCKIAVFSCPLDLMQTETKGTVLIKNAEELKSFSKGEEDLLEMQIK 135

Query: 610 IFPTXXXXXXXXXXXXEIWALHFLNKYHYYGLSRLNSKFDIR 735
                              ALHF NKY    + RL SK+D+R
Sbjct: 136 SIKEKGADVIVSGGKVADMALHFCNKYQIM-VVRLTSKWDLR 176


>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 505

 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 32/78 (41%), Positives = 40/78 (51%)
 Frame = +2

Query: 2   EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
           +H  AKLMV  S+ QD E+GDGT  V+VL+G            G+    IADGYE A   
Sbjct: 82  DHQIAKLMVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKI 141

Query: 182 CLEILPSLICNEIKDTKN 235
            LE + S+  N   D  N
Sbjct: 142 ALEHMDSIADNFPVDKDN 159


>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 27/74 (36%), Positives = 40/74 (54%)
 Frame = +2

Query: 2   EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
           +HPAAK M+  S+ QD EVGDGT  VI+L+G             +  ++I   Y  A+D 
Sbjct: 15  KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 74

Query: 182 CLEILPSLICNEIK 223
            ++IL   I  E++
Sbjct: 75  MIDILKQQIREELQ 88


>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 27/74 (36%), Positives = 40/74 (54%)
 Frame = +2

Query: 2   EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
           +HPAAK M+  S+ QD EVGDGT  VI+L+G             +  ++I   Y  A+D 
Sbjct: 212 KHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLAMDD 271

Query: 182 CLEILPSLICNEIK 223
            ++IL   I  E++
Sbjct: 272 MIDILKQQIREELQ 285


>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
          Length = 531

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/81 (27%), Positives = 39/81 (48%)
 Frame = +2

Query: 2   EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
           ++PAAK++V  S++QD EVGDGT  V VL+              +    I  G+ +++  
Sbjct: 74  DNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIHPQTIVAGWRKSVKA 133

Query: 182 CLEILPSLICNEIKDTKNIKE 244
             + L +   +   D +  +E
Sbjct: 134 AEKALEAAAVDHSSDPEKFRE 154


>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 762

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 23/87 (26%), Positives = 37/87 (42%)
 Frame = +2

Query: 2   EHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDK 181
           +HP A L+   +  QD   GDGT   +++ G            G+    + +G+E A  K
Sbjct: 172 QHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKKK 231

Query: 182 CLEILPSLICNEIKDTKNIKEVTKVLL 262
            LE+L  +  +   D   +  V K  L
Sbjct: 232 ALEVLEEVKVSREMDRDTLINVAKTSL 258


>SB_3970| Best HMM Match : Drf_FH1 (HMM E-Value=1.2)
          Length = 558

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 458 TSPSTSRLNTIPESTSDCNSPAPRILQTLTL 366
           TSP+T+R++  P+STS      P ILQ + L
Sbjct: 409 TSPATARVDIPPDSTSAVRPEDPSILQLIEL 439


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 479 LAFLAEETSPSTSRLNTIPESTSDCNSPAPRILQTLTLSTLNVV 348
           L F+ EET+   ++  T+      C  P+  +L T T  T+NV+
Sbjct: 25  LQFIEEETTRLYNKRFTLKAKDKQCELPSSELLFTTTPETINVL 68


>SB_47320| Best HMM Match : Ion_trans (HMM E-Value=2.7e-34)
          Length = 946

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 233 NIKEVTKVLLLLSCLNNMVMNNSFLSLSRKPVLQYYQKKLHL 358
           NIK V  +L+L+   N    NN  L+   +PVL  ++K++ L
Sbjct: 296 NIKSVVPILILIRAKNK---NNGKLTNIERPVLHSFEKRMQL 334


>SB_46667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1295

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 250 KGIVAAIMSKQYGHEQFISELVTKACVAILPEK 348
           +G  A   S ++GHEQ + +L+ K     LP+K
Sbjct: 87  EGYSALAWSAKHGHEQIVQKLIAKGAYYNLPDK 119


>SB_20598| Best HMM Match : Herpes_UL49_2 (HMM E-Value=6.4)
          Length = 292

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 658 PNLAPATITFTPESEISLICFSSKDSSP 575
           P + PAT +F PESEI+   F+S    P
Sbjct: 226 PRIKPATSSFAPESEINGTKFNSHTGRP 253


>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
          Length = 144

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +2

Query: 35  SQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSLICN 214
           S++QD EVGDGT  V VL+              +    I  G+ +++    + L +   +
Sbjct: 3   SKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAVD 62

Query: 215 EIKDTKNIKE 244
              D +  ++
Sbjct: 63  HSSDPEKFRD 72


>SB_16901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 909

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +2

Query: 224 DTKN-IKEVTKVLLLLSCLNN----MVMNNSFLSLSRKPVLQYYQKKLH 355
           D KN I   T +LLL S L +    M    SFL L   P++ Y  K LH
Sbjct: 661 DNKNGISSSTALLLLKSSLESIQPDMAAYGSFLQLDLIPIILYLSKMLH 709


>SB_39288| Best HMM Match : efhand (HMM E-Value=0.00063)
          Length = 213

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 20/72 (27%), Positives = 34/72 (47%)
 Frame = +1

Query: 250 KGIVAAIMSKQYGHEQFISELVTKACVAILPEKTTFNVDNVRVCKILGAGLLQSEVLSGM 429
           K + +A+     GH  F   L+  AC+A +    T   D + V +  G  +    VLS +
Sbjct: 102 KQMFSALDPDNKGHVTFRQYLIGTACLANIGSSKTMAQDALTVLQRCGKSI---SVLSSL 158

Query: 430 VFRREVEGDVSS 465
           V ++ V+G + S
Sbjct: 159 VDQQTVQGLLQS 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,994,563
Number of Sequences: 59808
Number of extensions: 392638
Number of successful extensions: 1257
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1253
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)