Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30256
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.4  
SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation fac...    27   3.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   5.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   7.7  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    26   7.7  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    26   7.7  
SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces ...    26   7.7  
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo...    26   7.7  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   7.7  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 265  HERFQGFYGGSRCTLNYIKSYIKNSVCI 348
            HERF+   G + C L Y+K YIK +  I
Sbjct: 1495 HERFKILAGINLCNLIYLKRYIKYAFSI 1522


>SPCC285.17 |spp27|uaf30|RNA polymerase I upstream activation factor
           complex subunit Spp27|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 233

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 289 RKILETFRVVRRSRHHISLIKLSRSCFDQTKATS 188
           R++LE  R V  S H   L  L   CFD+T A S
Sbjct: 26  RQLLEERRKVDLSAHKKDLNALILKCFDETAAPS 59


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = +1

Query: 208 QNSYGSI*LKRYGDGNV*QHERFQGFYGGSRCTLN 312
           QN Y S     Y DGNV  H+R    YG S  T N
Sbjct: 688 QNGYPS-----YSDGNVYPHDRVMINYGSSMPTAN 717


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +1

Query: 679 LGNQTGSIANTGPNKSSAFA--ESTTGFG-NRP 768
           +G+QTGS+ N  P +SS     +  TG   NRP
Sbjct: 57  VGSQTGSLVNAPPKRSSGIERFDHVTGTAENRP 89


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 742 STTGFGNRPTEKMRQETSSGLCLWGNLLAEP 834
           +TTGFG +  EKM  +   GL      +AEP
Sbjct: 114 NTTGFGAKMLEKMGYKQGQGLGANAEGIAEP 144


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +1

Query: 529 FIALMSRSMQSTWWKVVTTIHGYWAILFFFLPMLIALKGYIS 654
           F+  +S ++ ++W+ V+     +W  L  +L  LI   G+++
Sbjct: 35  FLHSVSLTLTASWYTVLWAFLPFWPFLIVYLIWLIYDDGFVT 76


>SPCC1281.02c |spf30||splicing factor Spf30 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 311

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -1

Query: 262 VRRSRHHISLIKLSRSCFDQTKATSSPVILNLFFVAAHIKRFQNLAAH 119
           VR     IS+  +S S  +     SSP + +   V A++   QN+A H
Sbjct: 158 VREPTKAISVASMSTSPSNYASRASSPDMKSSAAVTANVSPIQNVAQH 205


>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 21/95 (22%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
 Frame = -1

Query: 325 NF*YSLTYNDFHRKILETFRVVRRSRHH---ISLIKLSRSCFDQTKATSSPVILNLFFVA 155
           N   SL +N FH  + ET+ V  +++ +   + L++ +R   D+  A   P +L   F  
Sbjct: 207 NIDVSLYHNGFHGDLNETYYVGDKAKANPDLVCLVENTRIALDKAIAAVKPGVLFQEFGN 266

Query: 154 AHIKRFQNLAAHKKKDKNYLLTTTHCINSLSKIFN 50
              K   ++      +K   +  T+C + ++++F+
Sbjct: 267 IIEKHTNSIT-----EKQISVVRTYCGHGINQLFH 296


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 685 NQTGSIANTGPNKSSAFAESTTGFGNRPT 771
           +  GS ANT PN  ++   S    GN PT
Sbjct: 378 DNVGSSANTAPNSPTSANSSEGNQGNGPT 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,745
Number of Sequences: 5004
Number of extensions: 74189
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)