Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30256
         (844 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_434| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.0  
SB_34100| Best HMM Match : Abhydrolase_3 (HMM E-Value=6.7e-06)         29   6.2  
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)                28   8.2  

>SB_434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 814 PIDTAHWRFLAASFQWVGF 758
           P++TA WR+LA S QW+G+
Sbjct: 246 PVETAGWRWLACS-QWIGY 263


>SB_34100| Best HMM Match : Abhydrolase_3 (HMM E-Value=6.7e-06)
          Length = 363

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 753 IRKPTH*KDAARNLQWAVSMG*FTRR 830
           +R P+H  D AR++ W V  G  T+R
Sbjct: 174 VRHPSHINDVARSVAWVVGYGNATKR 199


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 643 GYISVTLACR*ALGNQTGSIA-NTGPNKSSAFAESTTGFGNRPTEKMRQETSSGLCLWGN 819
           G  S T A   + G   G+ A +TG   +SAF +S TGFG   T      T+ G    G 
Sbjct: 268 GLFSSTPATSASTGGLFGTTATSTGFGGTSAFGQSKTGFGTGTTAFGTSTTAFGQQQTGG 327

Query: 820 L 822
           L
Sbjct: 328 L 328


>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
          Length = 409

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 474 CVYMRPQYTALIRKC*F*FYCLNEPKHAVYLVESCNYHPWILGNS 608
           C+Y  P +T +I    +  Y +    + +Y++ +  YH +I+ +S
Sbjct: 299 CIYASPYHTYIIYASPYNIYIIYTSPYYIYIIYASPYHIYIVYSS 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,757,567
Number of Sequences: 59808
Number of extensions: 530200
Number of successful extensions: 1111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1110
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)