Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30256
         (844 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote...    30   1.7  
At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo...    29   3.9  
At2g25800.1 68415.m03096 expressed protein                             29   5.1  

>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
           kinase, putative contains protein kinase domains
          Length = 890

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -2

Query: 774 FSGSVSESGGRFCESTALVRASVSNTSGLIPES 676
           F G +  S  +FC  T  V  S +N SG IPES
Sbjct: 157 FFGEIPNSLFKFCYKTKFVSLSHNNLSGSIPES 189


>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 840

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 381 TLGEDALNVRARSERDREPGRTAPQNFNF*WCVYMRPQYTALIRKC*F*FYCLNEPKH 554
           T G+   N       D++  R  P++    WC +  P+Y  ++R+     +CL  P++
Sbjct: 93  TWGQFFRNAELEKTLDQDLSRLYPEH----WCYFQTPRYQGMLRRI-LLLWCLKHPEY 145


>At2g25800.1 68415.m03096 expressed protein
          Length = 996

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 676 ALGNQTGSIANTGPNKSSAFAESTTGFGNRPT 771
           ALG ++ S  + G NKSS  A  + G   RPT
Sbjct: 112 ALGLRSSSSLSPGSNKSSGSASGSNGKSKRPT 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,161,080
Number of Sequences: 28952
Number of extensions: 384309
Number of successful extensions: 859
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)