Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30255
         (714 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    27   0.15 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    27   0.15 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    27   0.15 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    27   0.15 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    27   0.15 
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    27   0.15 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           27   0.15 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    27   0.15 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    25   0.46 
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   1.9  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   1.9  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   3.3  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   3.3  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   4.3  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    22   4.3  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   5.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.5  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   7.5  
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    21   7.5  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   9.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTTSQNLSSPASSTSSTSSTEKA 182


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 182


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 182


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 182


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 182


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 88  PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 138


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 182


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL*ICSVVKPQ*ETKKTISAPPNCPRSSNSVRSPTWSA 441
           PSN N+T+   L +PL + S   P      T S   + P SS S  S T  A
Sbjct: 132 PSNSNATKSSGLTSPLSV-STSPPGKPATSTASQNLSSPASSTSSTSSTEKA 182


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 608 YPSQKPGSAPLLPCTCTHHEPDN---ANPY 528
           YP Q+P SA L P    ++ PD+   A PY
Sbjct: 268 YPMQRPKSASLSPPPHVYNPPDHIQQATPY 297


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 544 ITQILTDFSRCKFQTSTTPSTEPVTKYCPSGENRAH 437
           I   + D+SR  +    TP  EP        ENR+H
Sbjct: 37  INSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSH 72


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -3

Query: 544 ITQILTDFSRCKFQTSTTPSTEPVTKYCPSGENRAH 437
           I   + D+SR  +    TP  EP        ENR+H
Sbjct: 57  INSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSH 92


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 82  THPCLLMKQHETDRYMHLENLLAR 153
           T+P   +KQ E   Y H E L+AR
Sbjct: 550 TNPSDYVKQTERRFYRHRERLVAR 573


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 550 SLITQILTDFSRCKFQTSTTPSTEPVTK 467
           S++++    FS C  +    P  +PV K
Sbjct: 105 SVVSKFRAGFSECASEVGRFPGLDPVVK 132


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 508 FQTSTTPSTEPVTKYCPSGENRAHST 431
           FQ++TT +    +   PSG +  HS+
Sbjct: 24  FQSATTEAPAAYSSSSPSGSSPQHSS 49


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 508 FQTSTTPSTEPVTKYCPSGENRAHST 431
           FQ++TT +    +   PSG +  HS+
Sbjct: 24  FQSATTEAPAAYSSSSPSGSSPQHSS 49


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 268 SRWDEVRRTPPRRGTL 221
           +RW ++   P +RGTL
Sbjct: 445 ARWKDILEKPRQRGTL 460


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 330  WCREGADPGAVAI 292
            W  +GADPG + +
Sbjct: 2549 WIEKGADPGKIVM 2561


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 74  SKDLAAPNSRNSINSNTTCSYNS 6
           S   AA  + NS++ N  CS NS
Sbjct: 165 SPGAAAGRTGNSLSWNNPCSINS 187


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 286 PSNGNSTRVCSLPAPL 333
           PSN N+T+   L +PL
Sbjct: 132 PSNSNATKSSGLTSPL 147


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 330 WCREGADPGAVAI 292
           W   GADPG + I
Sbjct: 243 WVNAGADPGKLTI 255


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 257  VPSASTTGPGPQMATAPGSAPSR 325
            VP   T  P P  ++ PGS  S+
Sbjct: 1104 VPLKGTAVPPPSGSSGPGSTGSK 1126


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,295
Number of Sequences: 336
Number of extensions: 4349
Number of successful extensions: 23
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)