Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30255
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   6.6  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   8.8  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      21   8.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 254 LVPSASTTGPGPQMATAPGSAPS 322
           +V + S+  P P++A+AP S+ S
Sbjct: 504 VVETNSSPSPNPRIASAPSSSTS 526


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 486 DGVVEVWNLQREKSVRICVIRLMMSTCAWK 575
           DG+  + +++ E +  + V+ +M   C WK
Sbjct: 197 DGIENIGSIRWELAGTLAVVWIMCYFCIWK 226


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +3

Query: 486 DGVVEVWNLQREKSVRICVIRLMMSTCAWK 575
           DG+  + +++ E +  + V+ +M   C WK
Sbjct: 250 DGIENIGSIRWELAGTLAVVWIMCYFCIWK 279


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +2

Query: 182 AAEEARSG---AALPSQRPSPGRCPSYLVPSASTTGPGPQMATA 304
           A +E+++G   A+ P+   + G   +  +P+AS TG GP   +A
Sbjct: 202 ARDESKAGSTDASTPATVTTTGATTT--LPAASATGTGPATPSA 243


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 394 WVGQRSSSWS 365
           W+GQ+ +SWS
Sbjct: 759 WLGQQGNSWS 768


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 305 PGSAPSRHHYRFVPW 349
           P    +RH+Y FVP+
Sbjct: 467 PEKTANRHYYAFVPF 481


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 364 ETKKTISAPPNCPRSSNSVRS 426
           E +  I  PP CP  S  +++
Sbjct: 50  EPRYIIDVPPRCPPGSKFIKN 70


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 364 ETKKTISAPPNCPRSSNSVRS 426
           E +  I  PP CP  S  +++
Sbjct: 50  EPRYIIDVPPRCPPGSKFIKN 70


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
 Frame = +3

Query: 228 PRRGGVRRTSSHL-LALLGQALKWQQHQGLLPPG 326
           P   G  + S+ L  A+L   L    H  LLPPG
Sbjct: 336 PDLAGTSQGSAGLPSAILAMRLSHPLHGNLLPPG 369


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,965
Number of Sequences: 438
Number of extensions: 5250
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)