Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30254
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.7  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +2

Query: 494 TNLVPTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATP 646
           T + PTP +     R  Q     R T +       +    SPP    +ATP
Sbjct: 158 TPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAKKPRVLSPPLNNNDATP 208


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 480 SPSSRLTWCLPPYPLPT 530
           +P+ ++TW L  + LPT
Sbjct: 448 NPTPQVTWALDGFALPT 464


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 480 SPSSRLTWCLPPYPLPT 530
           +P+ ++TW L  + LPT
Sbjct: 448 NPTPQVTWALDGFALPT 464


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 477 TSPSSRLTWCLPPYPLP 527
           T P+    WCLPP   P
Sbjct: 479 TYPTLLPQWCLPPREAP 495


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 442 CFFEIRRRSECGPHRVPD*LGAYPRIHFPLVTY 540
           C  E+R++    P RV   +    RI FP+  +
Sbjct: 443 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 475


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 442 CFFEIRRRSECGPHRVPD*LGAYPRIHFPLVTY 540
           C  E+R++    P RV   +    RI FP+  +
Sbjct: 429 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 461


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 442 CFFEIRRRSECGPHRVPD*LGAYPRIHFPLVTY 540
           C  E+R++    P RV   +    RI FP+  +
Sbjct: 463 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 495


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +1

Query: 442 CFFEIRRRSECGPHRVPD*LGAYPRIHFPLVTY 540
           C  E+R++    P RV   +    RI FP+  +
Sbjct: 412 CTAELRKKEPPHPIRVAKTIDVIARITFPVAYF 444


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 88  ESASSLTSVPVCKDS*SSTPSVEVPALGSLPY*WS 192
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,978
Number of Sequences: 438
Number of extensions: 5081
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)