Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30252
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F306D0 Cluster: UPI0000F306D0 related cluster; n...    33   5.4  
UniRef50_A4HAH2 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q8CCI1 Cluster: 15 days embryo male testis cDNA, RIKEN ...    33   9.4  
UniRef50_Q1ARB9 Cluster: ATPase associated with various cellular...    33   9.4  
UniRef50_A5P378 Cluster: Putative uncharacterized protein; n=3; ...    33   9.4  

>UniRef50_UPI0000F306D0 Cluster: UPI0000F306D0 related cluster; n=1;
           Bos taurus|Rep: UPI0000F306D0 UniRef100 entry - Bos
           Taurus
          Length = 888

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +2

Query: 164 PHDPPPPRVQGARSSARACNQGSPGHQGGA 253
           P DPPP +  G R   R C  G PG  GGA
Sbjct: 25  PGDPPPVQRHGTRPCGR-CGPGGPGEAGGA 53


>UniRef50_A4HAH2 Cluster: Putative uncharacterized protein; n=1;
           Leishmania braziliensis|Rep: Putative uncharacterized
           protein - Leishmania braziliensis
          Length = 2377

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +2

Query: 143 HPRSLQDPHDP---PPPRVQGARSSARACNQGSPGHQG 247
           HP  LQ P  P   PPP      +SAR C + +PGH+G
Sbjct: 622 HPYELQHPQSPSLSPPPETSLNSTSARNC-RDAPGHRG 658


>UniRef50_Q8CCI1 Cluster: 15 days embryo male testis cDNA, RIKEN
           full-length enriched library, clone:8030441M13
           product:hypothetical protein, full insert sequence; n=1;
           Mus musculus|Rep: 15 days embryo male testis cDNA, RIKEN
           full-length enriched library, clone:8030441M13
           product:hypothetical protein, full insert sequence - Mus
           musculus (Mouse)
          Length = 188

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +2

Query: 47  QDVR*NRPHLTRGCRSGRIPYXXXXXXXXXXDHPRSLQ-DPHDPPPPRVQGARSSARACN 223
           + +R N+P L+R   SG +               RS       PPPPR     +SA + +
Sbjct: 12  ESLRTNQPTLSRKAWSGSLQQRTAVALAESQQRSRSPHASSAQPPPPREGATNASANSSS 71

Query: 224 QGSPGHQGGA 253
            GS G   GA
Sbjct: 72  SGSSGGGAGA 81


>UniRef50_Q1ARB9 Cluster: ATPase associated with various cellular
           activities, AAA_5; n=1; Rubrobacter xylanophilus DSM
           9941|Rep: ATPase associated with various cellular
           activities, AAA_5 - Rubrobacter xylanophilus (strain DSM
           9941 / NBRC 16129)
          Length = 620

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 149 RSLQDPHDPPPPRVQGARSSARACNQGSPGHQG 247
           R  Q P + PPP   GAR  A A ++ +PG +G
Sbjct: 291 RGPQGPEESPPPSANGARDRAPAGSRPNPGGEG 323


>UniRef50_A5P378 Cluster: Putative uncharacterized protein; n=3;
           Proteobacteria|Rep: Putative uncharacterized protein -
           Methylobacterium sp. 4-46
          Length = 1338

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +2

Query: 173 PPPPRVQGARSSARACNQGSPGHQGGAL 256
           P  PR+QGAR  AR      P H+GGAL
Sbjct: 131 PAAPRLQGARGLARGRRFQRPRHEGGAL 158


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 459,245,822
Number of Sequences: 1657284
Number of extensions: 6495670
Number of successful extensions: 27052
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26736
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)