Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30252
         (724 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0439 + 24319464-24320102                                         30   1.6  
09_06_0125 - 21011757-21012428                                         29   2.8  
06_03_1105 - 27634787-27636025                                         29   4.9  
11_01_0498 - 3828516-3829058                                           28   6.5  
07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049     28   6.5  
05_02_0088 - 6486641-6486793                                           28   6.5  
02_01_0087 + 623174-623421,623576-623693,624266-624588,625267-62...    28   6.5  
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    28   8.6  
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    28   8.6  

>03_05_0439 + 24319464-24320102
          Length = 212

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -1

Query: 133 LCPPPPPGVGD--ATTTATTSEMRAILAYILLVSA 35
           LCPPPP       ATTT T+SE  A+    L  SA
Sbjct: 25  LCPPPPCAAARPLATTTTTSSEEEAMTIIALAPSA 59


>09_06_0125 - 21011757-21012428
          Length = 223

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 133 LCPPPPPGVGDATTTATTSEMRAILAYILLVS 38
           L PPPPP VG     A+++  R  +A ++ VS
Sbjct: 181 LAPPPPPPVGSGAAAASSTWRRRRVALMVQVS 212


>06_03_1105 - 27634787-27636025
          Length = 412

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 140 DHPR-SLQDPHDPPPPRVQGARSSARACNQGSPGHQGG 250
           D PR SL    DP PPR++  RSS R     S   + G
Sbjct: 251 DIPRLSLDSAADPNPPRIRLVRSSHRHSTSSSSSSRAG 288


>11_01_0498 - 3828516-3829058
          Length = 180

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 149 RSLQDPHDPPPPRVQGARSSARACNQGSPGHQGGA 253
           RS ++P  PPPP    A S  R    G  G  GGA
Sbjct: 8   RSRREPKTPPPPPA-AAESDQRREEDGGGGGAGGA 41


>07_03_0689 + 20711313-20711906,20713224-20713860,20713946-20714049
          Length = 444

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 173 PPPPRVQGARSSARACNQGSP 235
           PP PR+QG R +  +C  G+P
Sbjct: 29  PPSPRLQGRRLTPPSCTPGTP 49


>05_02_0088 - 6486641-6486793
          Length = 50

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 127 PPPPPGVGDATTTATTSEMRAILAYILLVSAGLIQ 23
           PPPPP     TTTAT   +      +++   G IQ
Sbjct: 4   PPPPPSAAATTTTATAPAVSGEPGVVVVKRWGKIQ 38


>02_01_0087 +
           623174-623421,623576-623693,624266-624588,625267-625551,
           625643-625823,625964-626119
          Length = 436

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 127 PPPPPGVGDATTTATTS 77
           PPPP GVGD++T   +S
Sbjct: 12  PPPPEGVGDSSTAQASS 28


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 149 RSLQDPHDPPPPRVQGARSSARA 217
           RSL     PPPP  +  RSS+RA
Sbjct: 77  RSLSPSESPPPPAAKRERSSSRA 99


>07_03_0603 -
           19890664-19890823,19891104-19891329,19891498-19891636,
           19891849-19891942,19892291-19892311,19892506-19892941,
           19893133-19893280,19893369-19893476,19893543-19893659,
           19893960-19894016,19894488-19894553,19895140-19895328,
           19895410-19895523,19895684-19895766,19895857-19896322,
           19896832-19897476
          Length = 1022

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 127 PPPPPGVGDATTTATTSEMRAI 62
           PPPPP  G AT T     +RA+
Sbjct: 52  PPPPPRPGAATATPLARRLRAL 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,913,026
Number of Sequences: 37544
Number of extensions: 205016
Number of successful extensions: 1559
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1532
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)