Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30250
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    28   1.7  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    27   2.2  
SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.2  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   5.2  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    26   5.2  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +3

Query: 231 TTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTG-TPSRTYSP*SCDRCSNTPR 407
           TT G+PT     P    S YPS  +S    +R +S L +   P+ T+   S       P 
Sbjct: 720 TTSGLPTSSVSTPLSNSSAYPSSGSS--TFSRLSSTLTSSIIPTETFGSTSGSATGTRPT 777

Query: 408 PSSS 419
            SSS
Sbjct: 778 GSSS 781


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 38  ALGIVIFLTVGYCQEHNHHG--YTLQTLVKH--DVPQKIKTHHAIPVK 169
           AL IVI +TVG+ QE+        L  LV H  +V +  KT H +  K
Sbjct: 88  ALAIVIVVTVGFVQEYRSEQSLKALNNLVPHYCNVIRSGKTEHIVASK 135


>SPBC4.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 168 LTGIAWWVLIFCGTSCFTK 112
           + GIAW  LIF   SC TK
Sbjct: 31  ILGIAWLFLIFLCCSCLTK 49


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 369 YRCVMVYRYKVVRLFVWLLMVSLLMMGIVTDDTLGRHSGP 250
           +RC+ V     + LF+W+L V +  + I+T   +G +  P
Sbjct: 311 WRCMAVALEFPITLFLWMLAVYVSFLPIMTRRHIGDYGVP 350


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 186 LSMKLMKPTPHPLTRTTQGIPTGRCVFPKYR-PSRYPS*ANSP*ATTRTASLLCTGTPSR 362
           +S  + +PT   +  ++  +P+   V P+   P    S A+SP +T  T+S + +   S 
Sbjct: 452 ISTSVKQPTAS-VASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSST 510

Query: 363 TYSP*SCDRCSNTPRPSSSCTGTPYST 443
             S  S    +++  PSSS   +P ++
Sbjct: 511 LLSGSSAIPSTSSSTPSSSIISSPMTS 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,193
Number of Sequences: 5004
Number of extensions: 61460
Number of successful extensions: 145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)