Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30250
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       31   1.3  
01_05_0451 - 22361617-22361811,22362728-22362842,22363443-223635...    30   1.8  
07_01_0868 - 7200800-7200839,7200974-7201002,7201219-7201224,720...    29   4.1  
12_02_0188 - 15158824-15159215,15159299-15159809,15159885-151600...    28   7.2  
10_08_0521 + 18500105-18500529,18501216-18501284,18501467-185015...    28   7.2  
06_03_0647 + 23122074-23122187,23123423-23123488,23124467-231246...    28   7.2  
12_02_1164 + 26620779-26621087                                         28   9.5  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +3

Query: 195 KLMKPTPH-PLTRTTQGIPTGRCVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS 371
           +L  PT   P T +T+ + T     P    +   S A S   +T   SLL + T     +
Sbjct: 500 ELSTPTSQIPSTASTRELSTATGKIPSTPRTNPLSTATSKIPSTPRTSLLSSSTSKIPST 559

Query: 372 P*SCDRCSNTPR-PSSSCTGTPYST 443
           P +C+  + T + PS++CT +P ST
Sbjct: 560 PSTCELSTATGKIPSTTCT-SPLST 583


>01_05_0451 -
           22361617-22361811,22362728-22362842,22363443-22363513,
           22363600-22363754,22363843-22363933,22364049-22364104,
           22364910-22365027,22365087-22365200,22365289-22365504
          Length = 376

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 603 CILLSLHHHRGSRAGT-YCHRCGDLQFCIRKH 511
           C+LL  H     RAG   C RC    +C +KH
Sbjct: 136 CLLLDQHEQGKDRAGEKVCSRCRKSSYCSKKH 167


>07_01_0868 -
           7200800-7200839,7200974-7201002,7201219-7201224,
           7201656-7201715,7201950-7202025,7203045-7203247
          Length = 137

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
 Frame = +1

Query: 541 TPVTISTSTRSAMVM**KEDTVFHEADGLHSYR*IHSRTKNSGVQRWKLFNFRGFQST-- 714
           +P +I TS +S  V     D    E  G+     + S  + SGV RW+   +    ++  
Sbjct: 2   SPASIPTSCKSGEV-----DFGVEEVGGVEELANLESARRRSGVCRWRRLQYEATSASFL 56

Query: 715 -EGGQFHQHSSPPFKTF 762
             GG+F + ++ P   F
Sbjct: 57  PMGGRFDERAARPVLLF 73


>12_02_0188 -
           15158824-15159215,15159299-15159809,15159885-15160015,
           15160107-15160310,15160385-15161066,15161158-15161414,
           15161491-15161631,15161731-15162136
          Length = 907

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 249 WECPEWFS*ADAAWASLVS*TGATW 175
           W+ P+W++   A W +  S TG +W
Sbjct: 853 WQEPQWYAQLYAQWQTTASWTGQSW 877


>10_08_0521 +
           18500105-18500529,18501216-18501284,18501467-18501555,
           18501726-18501838,18502023-18502124,18502576-18502663,
           18502795-18503361,18503766-18504149,18504168-18504384,
           18504466-18504548,18505174-18505256,18505796-18506032,
           18506481-18506658,18506814-18507328,18507740-18507916,
           18508385-18508768,18508885-18509031
          Length = 1285

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 222 ADAAWASLVS*TGATWAVLTGIAWWVLIFCGTS 124
           + A W   ++ +   W++L G+ WW  + C  S
Sbjct: 674 SSAVWERAIADSRFWWSLLAGVDWWDAVGCTQS 706


>06_03_0647 +
           23122074-23122187,23123423-23123488,23124467-23124676,
           23124849-23125060,23125641-23126208
          Length = 389

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 361 RDGVPVQSSEAVRVVAHGEFAHDGYRDGR 275
           RD  P  + E VR+ A G + +DGY +G+
Sbjct: 226 RDHKPSCNREKVRIEASGGYVYDGYLNGQ 254


>12_02_1164 + 26620779-26621087
          Length = 102

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 505 GMHNDLHGE---IRRGEIHHGGRFVEYGVPVHDELGRGVLEQRSQLHG 371
           G H ++HG+      GE   GG    +G    +E G GV  +R ++HG
Sbjct: 35  GRHEEVHGDGGVAGCGEEEQGGDAAGHG---EEEQGGGVARRREEVHG 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,472,984
Number of Sequences: 37544
Number of extensions: 433561
Number of successful extensions: 1121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)