Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30250
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.59 
SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)                   30   2.4  
SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_57561| Best HMM Match : fn3 (HMM E-Value=0)                         29   4.2  
SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)                 29   5.5  
SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  

>SB_42042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 863

 Score = 31.9 bits (69), Expect = 0.59
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 219 PLTRTTQGIPTGRCVFPKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTYSP*S 380
           P T+ T+  P+ R   P   PSRY      PS  N+P +T    +   + TPSR  +P S
Sbjct: 498 PNTKVTESTPS-RYNTPLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYNTPWS 555

Query: 381 CDRCSNTPRPSSSCTGTPYST 443
                NTP  + S   TP+ST
Sbjct: 556 TPSRYNTPWSTPSRYNTPWST 576



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +3

Query: 207 PTPHPLTRTTQGIPTGRCVFPKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTY 368
           P P P    T      R   P   PSRY      PS  N+P +T    +   + TPSR  
Sbjct: 513 PLPTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYN 571

Query: 369 SP*SCDRCSNTPRPSSSCTGTPYST 443
           +P S     NTP  + S   TP+ST
Sbjct: 572 TPWSTPSRYNTPWSTPSRYNTPWST 596



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
 Frame = +3

Query: 267 PKYRPSRY------PS*ANSP*ATTRTASLLCTGTPSRTYSP*SCDRCSNTPRPSSSCTG 428
           P   PSRY      PS  N+P +T    +   + TPSR  +P S     NTP P+ S   
Sbjct: 613 PWSTPSRYNTPWSTPSRYNTPWSTPSRYNTPWS-TPSRYNTPWSTPSRYNTPWPTPSRYN 671

Query: 429 TPYST 443
           TP+ST
Sbjct: 672 TPWST 676


>SB_43091| Best HMM Match : DUF1059 (HMM E-Value=2.8)
          Length = 291

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 71  YCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVY 193
           Y  EH+ H  +   + +HDVP K   HH    K  H  P Y
Sbjct: 142 YHHEHSRHPVS-DYIPEHDVPDKKPEHHVPDNKPEHHIPDY 181


>SB_20761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 506

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 342 KVVRLFVWLLMVSLLMMGIVTDDT-LGRHSGPWEC 241
           K++  F+W++     ++ +V  +  LGR SG WEC
Sbjct: 294 KLITSFIWIVSALFNVLYLVLFEVNLGRKSGVWEC 328


>SB_57561| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1614

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 633 VPLNTQPDKKFRGSTLEVIQLPGFSKHG-GGPISPAQ 740
           V  NT       G +L VI + G SKHG G P SP Q
Sbjct: 239 VGTNTATLTDLTGDSLYVITIRGVSKHGAGAPSSPIQ 275


>SB_51825| Best HMM Match : 7tm_1 (HMM E-Value=3.8e-08)
          Length = 364

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 363 CVMVYRYKVVRLFVWLLMVSLLMMGIV 283
           C MVYRY+++R F    +VSL +  I+
Sbjct: 28  CYMVYRYRILRTFTNGFVVSLALSDIL 54


>SB_29339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 77  QEHNHHGYTLQTLVKHDVPQKIKTHHAIPVK 169
           Q+H H    L+T+VK D P  ++T  +  +K
Sbjct: 658 QDHMHESLKLKTIVKGDAPTSLQTSTSANIK 688


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,283,479
Number of Sequences: 59808
Number of extensions: 499391
Number of successful extensions: 1585
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1570
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)