Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30250
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical ...    33   0.30 
U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,...    31   1.2  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AL110500-1|CAB60426.3|  780|Caenorhabditis elegans Hypothetical
           protein Y87G2A.1 protein.
          Length = 780

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 59  LTVGYCQEHNHHGYTLQTLVKHDVPQKIKTHHAIPVKTAHV 181
           +T+ YC EH  HGY L+   +H  P+       +PV   +V
Sbjct: 398 VTIDYCLEHQQHGYDLEP--RHFGPRSATNSRGLPVAKDYV 436


>U49829-4|AAK68350.1|  427|Caenorhabditis elegans Dehydrogenases,
           short chain protein29 protein.
          Length = 427

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = -3

Query: 432 VYRYMMNW-GVVYWSSDHSFMDYRCV-MVYRYKVVRLFVWLLMVSLLMMGIVT 280
           V R + N+ GV Y +SD SF     + M   YK  +LF WLL+V  L +  ++
Sbjct: 286 VCRSLRNYLGVKYSASDPSFCKLTLIEMSDYYKTPQLFWWLLIVPALAINYIS 338


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 324 RTASLLCTGTPSRTYSP*SCDRCSNT-PRPSSSCTGTP 434
           RT +  C+GTP+  Y P SC     T P  +++C   P
Sbjct: 773 RTTTGFCSGTPTTPYPPNSCQNGGVTDPTNNATCICPP 810


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 324 RTASLLCTGTPSRTYSP*SCDRCSNT-PRPSSSCTGTP 434
           RT +  C+GTP+  Y P SC     T P  +++C   P
Sbjct: 773 RTTTGFCSGTPTTPYPPNSCQNGGVTDPTNNATCICPP 810


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
           protein T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 324 RTASLLCTGTPSRTYSP*SCDRCSNT-PRPSSSCTGTP 434
           RT +  C+GTP+  Y P SC     T P  +++C   P
Sbjct: 773 RTTTGFCSGTPTTPYPPNSCQNGGVTDPTNNATCICPP 810


>U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical
           protein B0280.3 protein.
          Length = 251

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/35 (48%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 584 CSERRIQSFTRL-TGSIRTVKYTAGQKIQGFNAGS 685
           C E+ +QS  RL  GS  TVKY      QGF  GS
Sbjct: 25  CGEKYVQSGCRLGVGSGSTVKYLVEYLKQGFQNGS 59


>Z70265-1|CAA94202.1| 1283|Caenorhabditis elegans Hypothetical
           protein C05A9.1 protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 41  LGIVIFLTVGYCQEHNHH--GYTLQTLVKHDVPQKIKTHHAIPVKTAHVAPVYET 199
           LG+V  +  G CQ    +  G T Q LVK  V   I      PV  AH   ++E+
Sbjct: 70  LGVVFSILTGMCQPFESYTLGETSQVLVK--VTNAINNKTIDPVDLAHAYKLFES 122


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 258 CVFPKYRPSRYPS*ANSP*ATTRTASLLCTGTPSRTYS--P*SCDR-CSNTPRPSSSCTG 428
           C+ PK   S  PS  +SP  T    S    G+  R  +  P +    CS+   P+++CT 
Sbjct: 154 CIVPKRMSSLSPS-TSSPSNTENPCSKCPLGSACRNGNCIPLTTSNLCSDGSPPNNTCTR 212

Query: 429 TPYS 440
            PYS
Sbjct: 213 DPYS 216


>AF026204-3|AAB71253.1|  424|Caenorhabditis elegans Hypothetical
           protein C30E1.8 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 587 SERRIQSFTRLTGSIRTVKYTAGQKIQGFNAGSYSTSGVFKARRGANFTST 739
           S R    + ++TG ++ V       I GFN  S++T+G +    G + ++T
Sbjct: 136 SLRMTAFYIKITGLLKFVIGPGKYDIDGFNTSSFTTTGFYMKLHGDDDSTT 186


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,930
Number of Sequences: 27780
Number of extensions: 359850
Number of successful extensions: 977
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)