Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30250
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   7.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.3  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 403 GVLEQRSQLHGL*VRDG 353
           G+L Q  Q HGL V++G
Sbjct: 193 GILSQHPQQHGLGVQNG 209


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 237 QGIPTGRCVFPKYRPSRY 290
           Q +P G  VFP +R   Y
Sbjct: 53  QVLPNGNLVFPPFRAEDY 70


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -1

Query: 410 GAWCIGAAITASW 372
           GA C+G++I A W
Sbjct: 578 GATCLGSSIKAMW 590


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 17  TSKMFGKALGIVIFLTVGYCQE 82
           TSK+FG+AL   I  TV +  E
Sbjct: 456 TSKLFGRALSRRIKATVLFATE 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,742
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)