Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30250
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-...    30   1.9  
At5g03415.1 68418.m00294 DPB-1 transcription factor, putative (D...    28   7.9  
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si...    28   7.9  

>At2g01430.1 68415.m00066 homeobox-leucine zipper protein 17 (HB-17)
           / HD-ZIP transcription factor 17 identical to
           (GI:18857716) homeodomain-leucine zipper protein ATHB-17
           (GI:18857716) [Arabidopsis thaliana]
          Length = 275

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -3

Query: 444 LLNMVYRYMMNWGVVYWSSDHSFMDYRCVMVYRYK-VVRLFVWLLMVSL 301
           ++ +++ Y+  +    ++  H  MDY CV +Y+YK +V L V L  + L
Sbjct: 1   MIKLLFTYICTYTYKLYALYH--MDYACVCMYKYKGIVTLQVCLFYIKL 47


>At5g03415.1 68418.m00294 DPB-1 transcription factor, putative (DPB)
           similar to Swiss-Prot:Q14186 transcription factor DP-1
           [Homo sapiens];  contains Pfam profile PF02319:
           Transcription factor E2F/dimerisation partner (TDP)
          Length = 385

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 587 SERRIQSFTRLTG-SIRTVKYTAGQKIQGFNAGSYSTSGVFKARRG 721
           S R  Q+ T +T  S  T +      IQG +AGS   SGV K +RG
Sbjct: 46  SSRSEQTITVVTSTSDTTFQRLNNLDIQGDDAGSQGASGVKKKKRG 91


>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
           similar to GTPase activating protein [Yarrowia
           lipolytica] GI:2370595; contains Pfam profile PF00566:
           TBC domain
          Length = 720

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 77  QEHNHHGYTLQTLVKHDVPQKIKTH 151
           Q H HH    QT +++ +P++I +H
Sbjct: 676 QNHKHHEIQNQTAMENQIPEEITSH 700


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,309
Number of Sequences: 28952
Number of extensions: 335979
Number of successful extensions: 894
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)