Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30249
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    30   0.017
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.5  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   2.5  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   4.4  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   7.6  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   7.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 174 TSPSAAPSNRRTAATSPSGVAC*RSAAHPL-VPSYPGKRQCSRPLRFH 314
           TSP+AAP    T++ SP+ VA   +A+ PL +P+      C   +R H
Sbjct: 28  TSPAAAPPPATTSSGSPASVA--SNASAPLHIPAKRAAYDCEGVIRHH 73


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 168 WTTSPSAAPSNRRTAATSP 224
           +TT PS  P+N+    T P
Sbjct: 177 FTTKPSTKPTNKPVVVTKP 195



 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 555 SSAPCPPQFPELTFLSGWPIPRRSLRCT 638
           S  PCPPQ  +L  +    +     +CT
Sbjct: 49  SKGPCPPQGVDLKRVLPEALQTNCAKCT 76


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 651 DKRFRCTEGFFLELATRRGTL 589
           DK +RC  G   E A R GT+
Sbjct: 489 DKYYRCVHGKPTEFACRPGTV 509


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 513 YTPNDVARANVNRPSSAPCPP 575
           +T  D ++ ++  PSS P PP
Sbjct: 261 FTLVDASQHDLGSPSSGPAPP 281


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 285 VFLDSLVRGGVRPIFSTQRHLAKWQPSFYYWAQRWARS 172
           VF    V  G  P+F  +     ++PS Y+ ++  A S
Sbjct: 462 VFAVINVFSGELPVFLQEHRNGMYRPSIYFISKTLAES 499


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -3

Query: 285 VFLDSLVRGGVRPIFSTQRHLAKWQPSFYYWAQRWARS 172
           VF    V  G  P+F  +     ++PS Y+ ++  A S
Sbjct: 462 VFAVINVFSGELPVFLQEHRNGMYRPSIYFISKTLAES 499


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,884
Number of Sequences: 336
Number of extensions: 4328
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)