Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30249
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   1.6  
SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.6  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    26   4.7  
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    26   6.3  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   8.3  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   8.3  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +1

Query: 283 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEG 462
           N+N LA+   + + ++++P+  P+  PD   +++   + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 463 TLLK 474
           TLLK
Sbjct: 385 TLLK 388


>SPCC1259.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 168

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 541 LARATSLGVYVSCTTDRP----SPCWA*GVSPRGTRGGRSAPCTRRPERPQSPSGRGPGR 374
           L++ T+L    + T   P    SP  + G+SP   +   +   +R+ +R ++  G    R
Sbjct: 105 LSKLTALSKSTNSTLSTPKSFHSPLQSRGISPSSAQSSAAVSSSRKQKRKRTSEGPSERR 164

Query: 373 AR 368
           AR
Sbjct: 165 AR 166


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 474 AQHG--DGRSVVQETYTPNDVA---RANVNRPSSAPCPP 575
           A HG  D   V Q+ + P        ANV+RP+ AP PP
Sbjct: 45  AFHGSVDVPQVAQKAFDPQAATVSESANVSRPTPAPVPP 83


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 174 TSPSAAPSNRRTAATSPSGVAC*RSAAHPLVPSYPGKR 287
           T+PSA   +  T   +  G A  R    P+VPS P ++
Sbjct: 2   TAPSATAFSSATTQPTTEGNASMRKRTIPVVPSVPERK 39


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +2

Query: 77  LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 184
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 138 DRKTNAPPRVWTTSPSAAPSN-RRTAATSPSGVAC*RSAAHPLVPS 272
           D+  + PP  W T P++       +     SG A   +AA+P++PS
Sbjct: 531 DKPFSCPP-TWNTGPNSLQQTIANSRPEGNSGSAKKAAAANPMIPS 575


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,110,387
Number of Sequences: 5004
Number of extensions: 67507
Number of successful extensions: 253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)