Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30249
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical p... 143 1e-34
D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2 pr... 143 1e-34
U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical p... 140 9e-34
Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical pr... 128 4e-30
D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1 pr... 128 4e-30
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 31 0.83
Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical p... 31 0.83
Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical pr... 29 3.4
M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein ( C.ele... 29 3.4
AL023828-13|CAA19457.2| 419|Caenorhabditis elegans Hypothetical... 29 3.4
AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical ... 29 4.4
AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical ... 28 5.9
Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical pr... 28 7.8
U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protei... 28 7.8
U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protei... 28 7.8
U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protei... 28 7.8
U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protei... 28 7.8
U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protei... 28 7.8
U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protei... 28 7.8
>U13070-15|AAC46646.1| 366|Caenorhabditis elegans Hypothetical
protein F01F1.12a protein.
Length = 366
Score = 143 bits (346), Expect = 1e-34
Identities = 72/101 (71%), Positives = 78/101 (77%)
Frame = +1
Query: 253 HTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKA 432
HTPS+ + ENANVLARYASICQ+ +VPIVEPEVL DGEHDL RAQKVTE VLA VYKA
Sbjct: 160 HTPSHLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKA 219
Query: 433 LNDHHVYLEGTLLKPNMVTAGQSCKRRTLPTTSRAPTLTAL 555
L DHHVYLEGTLLKPNMVT GQS + T+TAL
Sbjct: 220 LADHHVYLEGTLLKPNMVTPGQSSASKASHEAIGLATVTAL 260
Score = 105 bits (253), Expect = 2e-23
Identities = 52/87 (59%), Positives = 60/87 (68%)
Frame = +2
Query: 2 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLA 181
+ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGLD LA
Sbjct: 76 HISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGLDKLA 135
Query: 182 QRCAQ**KDGCHFAKWRCVLKIGRTPP 262
+R A K GC FAKWRCVL IG P
Sbjct: 136 ERAAAFKKGGCGFAKWRCVLNIGTHTP 162
>D83739-1|BAA12092.1| 366|Caenorhabditis elegans aldolase Ce2
protein.
Length = 366
Score = 143 bits (346), Expect = 1e-34
Identities = 72/101 (71%), Positives = 78/101 (77%)
Frame = +1
Query: 253 HTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKA 432
HTPS+ + ENANVLARYASICQ+ +VPIVEPEVL DGEHDL RAQKVTE VLA VYKA
Sbjct: 160 HTPSHLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKA 219
Query: 433 LNDHHVYLEGTLLKPNMVTAGQSCKRRTLPTTSRAPTLTAL 555
L DHHVYLEGTLLKPNMVT GQS + T+TAL
Sbjct: 220 LADHHVYLEGTLLKPNMVTPGQSSASKASHEAIGLATVTAL 260
Score = 105 bits (253), Expect = 2e-23
Identities = 52/87 (59%), Positives = 60/87 (68%)
Frame = +2
Query: 2 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLA 181
+ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGLD LA
Sbjct: 76 HISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGLDKLA 135
Query: 182 QRCAQ**KDGCHFAKWRCVLKIGRTPP 262
+R A K GC FAKWRCVL IG P
Sbjct: 136 ERAAAFKKGGCGFAKWRCVLNIGTHTP 162
>U13070-14|AAM22057.1| 259|Caenorhabditis elegans Hypothetical
protein F01F1.12b protein.
Length = 259
Score = 140 bits (339), Expect = 9e-34
Identities = 68/83 (81%), Positives = 72/83 (86%)
Frame = +1
Query: 253 HTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKA 432
HTPS+ + ENANVLARYASICQ+ +VPIVEPEVL DGEHDL RAQKVTE VLA VYKA
Sbjct: 160 HTPSHLGMLENANVLARYASICQANGLVPIVEPEVLCDGEHDLARAQKVTEQVLAFVYKA 219
Query: 433 LNDHHVYLEGTLLKPNMVTAGQS 501
L DHHVYLEGTLLKPNMVT GQS
Sbjct: 220 LADHHVYLEGTLLKPNMVTPGQS 242
Score = 105 bits (253), Expect = 2e-23
Identities = 52/87 (59%), Positives = 60/87 (68%)
Frame = +2
Query: 2 NISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLA 181
+ISGVIL+ ET +Q D G LL K+GI+PGIK+D GVVPL G+ E TTQGLD LA
Sbjct: 76 HISGVILYEETFHQSTDKGEKFTDLLIKQGIVPGIKLDLGVVPLAGTIGEGTTQGLDKLA 135
Query: 182 QRCAQ**KDGCHFAKWRCVLKIGRTPP 262
+R A K GC FAKWRCVL IG P
Sbjct: 136 ERAAAFKKGGCGFAKWRCVLNIGTHTP 162
>Z81115-1|CAB03291.1| 365|Caenorhabditis elegans Hypothetical
protein T05D4.1 protein.
Length = 365
Score = 128 bits (309), Expect = 4e-30
Identities = 60/86 (69%), Positives = 67/86 (77%)
Frame = +2
Query: 5 ISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 184
ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+ E TTQGLDDL
Sbjct: 74 ISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTIGEGTTQGLDDLNA 133
Query: 185 RCAQ**KDGCHFAKWRCVLKIGRTPP 262
RCAQ KDG FAKWRCV KI T P
Sbjct: 134 RCAQYKKDGAQFAKWRCVHKISSTTP 159
Score = 126 bits (305), Expect = 1e-29
Identities = 59/82 (71%), Positives = 69/82 (84%)
Frame = +1
Query: 256 TPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKAL 435
TPS A++E A+ LARYASICQ +VPIVEPE+LPDGEH L R QK+TE VL+ VY AL
Sbjct: 158 TPSVTALKEIASNLARYASICQQNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHAL 217
Query: 436 NDHHVYLEGTLLKPNMVTAGQS 501
N+HHV+LEGTLLKPNMVT+GQS
Sbjct: 218 NEHHVFLEGTLLKPNMVTSGQS 239
>D83738-1|BAA12091.1| 366|Caenorhabditis elegans aldolase Ce1
protein.
Length = 366
Score = 128 bits (309), Expect = 4e-30
Identities = 60/86 (69%), Positives = 67/86 (77%)
Frame = +2
Query: 5 ISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 184
ISGVI+FHET YQK DDG P +LL+++GIIPGIKVDKGVVP+ G+ E TTQGLDDL
Sbjct: 74 ISGVIMFHETFYQKTDDGKPFTALLQEQGIIPGIKVDKGVVPMAGTIGEGTTQGLDDLNA 133
Query: 185 RCAQ**KDGCHFAKWRCVLKIGRTPP 262
RCAQ KDG FAKWRCV KI T P
Sbjct: 134 RCAQYKKDGAQFAKWRCVHKISSTTP 159
Score = 121 bits (292), Expect = 5e-28
Identities = 58/83 (69%), Positives = 69/83 (83%), Gaps = 1/83 (1%)
Frame = +1
Query: 256 TPSYQAIQENA-NVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKA 432
TPS A++E A N+ +RYASICQ +VPIVEPE+LPDGEH L R QK+TE VL+ VY A
Sbjct: 158 TPSVTALKEIASNLGSRYASICQQNGLVPIVEPEILPDGEHCLARGQKITETVLSYVYHA 217
Query: 433 LNDHHVYLEGTLLKPNMVTAGQS 501
LN+HHV+LEGTLLKPNMVT+GQS
Sbjct: 218 LNEHHVFLEGTLLKPNMVTSGQS 240
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 31.1 bits (67), Expect = 0.83
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 147 TNAPPRVWTTSPSAAPSNRRTAATSPSGVAC*R--SAAHPLVPSYPGKRQC 293
TN P TT P AAPS +AT S C ++ +P P +R C
Sbjct: 271 TNPPSMGTTTKPPAAPSTACGSATCTSTQVCASPLNSTQTCIPRLPDRRYC 321
>Z98877-15|CAB63407.3| 572|Caenorhabditis elegans Hypothetical
protein Y69H2.10a protein.
Length = 572
Score = 31.1 bits (67), Expect = 0.83
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 147 TNAPPRVWTTSPSAAPSNRRTAATSPSGVAC*R--SAAHPLVPSYPGKRQC 293
TN P TT P AAPS +AT S C ++ +P P +R C
Sbjct: 271 TNPPSMGTTTKPPAAPSTACGSATCTSTQVCASPLNSTQTCIPRLPDRRYC 321
>Z66499-3|CAA91300.1| 348|Caenorhabditis elegans Hypothetical
protein T01B7.7 protein.
Length = 348
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 469 GVSPRGTRGGRSAPCTRRPERPQSPSGRG--PGRARHQ 362
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>M34451-1|AAA28143.1| 348|Caenorhabditis elegans protein (
C.elegans collagen (rol-6) gene, complete cds. ).
Length = 348
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = -2
Query: 469 GVSPRGTRGGRSAPCTRRPERPQSPSGRG--PGRARHQ 362
G P G G R P PE PQ P+GR PG++ Q
Sbjct: 256 GERPLGRPGPRGPPGEAGPEGPQGPTGRDAYPGQSGPQ 293
>AL023828-13|CAA19457.2| 419|Caenorhabditis elegans Hypothetical
protein Y17G7B.11 protein.
Length = 419
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Frame = +3
Query: 441 PPRVPRGDTP----QAQHGDGRSVVQETYTPNDVARANVNRPSSAPCPPQF-PELTFLSG 605
PP P G+ P ++ HG G+ E + P N+ + ++ PP++ P L SG
Sbjct: 359 PPASPGGEAPPSYEESVHGAGKVEDAEAFAPRYPVYNNLPQQQNSQLPPEYAPPLPAKSG 418
Query: 606 W 608
+
Sbjct: 419 F 419
>AF016439-1|AAB65898.3| 721|Caenorhabditis elegans Hypothetical
protein R02F11.2 protein.
Length = 721
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -1
Query: 251 GRSSARNATWRSGSRPSITGRSAGR---GRPDPGWCIRL 144
GR N G RPS +G AG RP GWC+++
Sbjct: 253 GRPRPGNGGGGGGVRPSNSGCDAGWRRFNRPSGGWCVKV 291
>AC024775-8|AAK68458.1| 347|Caenorhabditis elegans Hypothetical
protein Y41D4A.8 protein.
Length = 347
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 53 DGTPLVSLLEKKGII--PGIKVDKGVVPLFGSEDECT 157
D +PLVS+L G+I P + + VPLF ED CT
Sbjct: 10 DPSPLVSVL---GLIKSPDLMIGSTEVPLFEEEDMCT 43
>Z99281-6|CAB54458.2| 625|Caenorhabditis elegans Hypothetical
protein Y57G11C.9b protein.
Length = 625
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSARCVGSDRWKRSGR 296
R RS +R R +SP+ R +RH+ R + R +R R + SGR
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGR 230
>Z99281-5|CAB54457.1| 553|Caenorhabditis elegans Hypothetical
protein Y57G11C.9a protein.
Length = 553
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSARCVGSDRWKRSGR 296
R RS +R R +SP+ R +RH+ R + R +R R + SGR
Sbjct: 177 RSPSRSRSRSRSRSVSRSKSPASRNGRVSRHRSRSQNRSRSRSNTRSRSRSSGR 230
>Z82053-1|CAB04834.1| 233|Caenorhabditis elegans Hypothetical
protein T26E3.1 protein.
Length = 233
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Frame = -1
Query: 233 NATWRSGSRPSITGRSAGR---GRPDPGWCIRL 144
N G RP+ G AG RP+ GWC+R+
Sbjct: 48 NGNGNGGGRPTNGGCDAGWRRFNRPNGGWCVRV 80
>Z78418-3|CAB01697.1| 932|Caenorhabditis elegans Hypothetical
protein F25D7.4 protein.
Length = 932
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -2
Query: 502 TTDRPSPCWA*GVSPRGTRGGRSAPCTRRPERPQSPSGRGPGRAR 368
TT +P V PR T ++AP ++ P R P+ P R
Sbjct: 338 TTRSATPATRTAVPPRATAPPKAAPASKAPTRAPIPARSAPAPPR 382
>Z77657-1|CAB01144.1| 130|Caenorhabditis elegans Hypothetical
protein F08H9.2 protein.
Length = 130
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -2
Query: 439 RSAPCTRRPERPQSPSGRGPGRARHQVRLRARQSARCVGSDRWK-RSGR 296
R+ TRR ++PS R+R + R R+R +R S R + RS R
Sbjct: 47 RTNSLTRRRSSTKAPSSARQSRSRSRSRSRSRSKSRSTSSRRSRSRSAR 95
>U53344-2|AAP13769.1| 301|Caenorhabditis elegans Collagen protein
166, isoform b protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Frame = -2
Query: 610 GHPERNVNSGNCGGHGA-----EEGRLTLARATSLGVYVSCTTDRPSPCWA*GV----SP 458
G P N+GN GG GA ++G A A V+ + P P A G P
Sbjct: 181 GQPGAPGNNGNAGGPGAPGQAGQDGHPGNAGAPGAPGKVN---EVPGPAGAPGAPGPDGP 237
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPG 377
G G AP + PQ P+G G
Sbjct: 238 AGPAGSPGAPGNPGSQGPQGPAGDNGG 264
>U53344-1|AAA96223.1| 363|Caenorhabditis elegans Collagen protein
166, isoform a protein.
Length = 363
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Frame = -2
Query: 610 GHPERNVNSGNCGGHGA-----EEGRLTLARATSLGVYVSCTTDRPSPCWA*GV----SP 458
G P N+GN GG GA ++G A A V+ + P P A G P
Sbjct: 243 GQPGAPGNNGNAGGPGAPGQAGQDGHPGNAGAPGAPGKVN---EVPGPAGAPGAPGPDGP 299
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPG 377
G G AP + PQ P+G G
Sbjct: 300 AGPAGSPGAPGNPGSQGPQGPAGDNGG 326
>U39644-6|AAO44907.1| 300|Caenorhabditis elegans Collagen protein
170 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Frame = -2
Query: 610 GHPERNVNSGNCGGHGA-----EEGRLTLARATSLGVYVSCTTDRPSPCWA*GV----SP 458
G P N+GN GG GA ++G A A V+ + P P A G P
Sbjct: 180 GQPGAPGNNGNAGGPGAPGQAGQDGHPGNAGAPGAPGKVN---EVPGPAGAPGAPGPDGP 236
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPG 377
G G AP + PQ P+G G
Sbjct: 237 AGPAGSPGAPGNPGSQGPQGPAGDNGG 263
>U39644-5|AAO44906.1| 300|Caenorhabditis elegans Collagen protein
169 protein.
Length = 300
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Frame = -2
Query: 610 GHPERNVNSGNCGGHGA-----EEGRLTLARATSLGVYVSCTTDRPSPCWA*GV----SP 458
G P N+GN GG GA ++G A A V+ + P P A G P
Sbjct: 180 GQPGAPGNNGNAGGPGAPGQAGQDGHPGNAGAPGAPGKVN---EVPGPAGAPGAPGPDGP 236
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPG 377
G G AP + PQ P+G G
Sbjct: 237 AGPAGSPGAPGNPGSQGPQGPAGDNGG 263
>U39644-4|AAA80357.2| 301|Caenorhabditis elegans Collagen protein
168 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Frame = -2
Query: 610 GHPERNVNSGNCGGHGA-----EEGRLTLARATSLGVYVSCTTDRPSPCWA*GV----SP 458
G P N+GN GG GA ++G A A V+ + P P A G P
Sbjct: 181 GQPGAPGNNGNAGGPGAPGQAGQDGHPGNAGAPGAPGKVN---EVPGPAGAPGAPGPDGP 237
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPG 377
G G AP + PQ P+G G
Sbjct: 238 AGPAGSPGAPGNPGSQGPQGPAGDNGG 264
>U39644-3|AAA80358.2| 301|Caenorhabditis elegans Collagen protein
167 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.8
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 9/87 (10%)
Frame = -2
Query: 610 GHPERNVNSGNCGGHGA-----EEGRLTLARATSLGVYVSCTTDRPSPCWA*GV----SP 458
G P N+GN GG GA ++G A A V+ + P P A G P
Sbjct: 181 GQPGAPGNNGNAGGPGAPGQAGQDGHPGNAGAPGAPGKVN---EVPGPAGAPGAPGPDGP 237
Query: 457 RGTRGGRSAPCTRRPERPQSPSGRGPG 377
G G AP + PQ P+G G
Sbjct: 238 AGPAGSPGAPGNPGSQGPQGPAGDNGG 264
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,927,621
Number of Sequences: 27780
Number of extensions: 421594
Number of successful extensions: 1722
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -