Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30249
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   3.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 411 NDLSHLLGAVQVVLAIR*DFGLDNRHDA 328
           N+L+H +  +     I  DFG D R DA
Sbjct: 31  NNLAHSMKVIYEWKHIDFDFGSDERRDA 58


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +1

Query: 67   GLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRP 195
            G   G+ G    H G +G      +G   + P SG P P   P
Sbjct: 1821 GSQYGQYGAPYDHYGSRGSVGRRSVGSARNIPVSGSPEPPPPP 1863


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 457 RGTRGGRSAPCTRRPERPQS 398
           R  +  +  PCT+ P  PQ+
Sbjct: 304 RAEKDPKKMPCTQPPSAPQN 323


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 31  DPLPEG*RWNASGLPAGEEG 90
           DP P   +  AS + AGEEG
Sbjct: 589 DPXPNTCKVIASSVSAGEEG 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,383
Number of Sequences: 438
Number of extensions: 5318
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)