Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30248
(817 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4SEQ2 Cluster: Chromosome 3 SCAF14614, whole genome sh... 42 0.019
UniRef50_UPI00005A03AE Cluster: PREDICTED: similar to tubulin, a... 41 0.032
UniRef50_Q7PUE2 Cluster: ENSANGP00000013927; n=2; Anopheles gamb... 41 0.043
UniRef50_Q4S6A2 Cluster: Chromosome 9 SCAF14729, whole genome sh... 40 0.099
UniRef50_Q8N532 Cluster: TUBA1C protein; n=9; Amniota|Rep: TUBA1... 40 0.099
UniRef50_P68363 Cluster: Tubulin alpha-1B chain; n=970; Eukaryot... 40 0.099
UniRef50_Q6AU00 Cluster: Alpha tubulin; n=1; Oryza sativa (japon... 38 0.23
UniRef50_Q3HRW7 Cluster: Alpha-tubulin-like protein; n=3; Eukary... 38 0.23
UniRef50_Q4S633 Cluster: Chromosome 9 SCAF14729, whole genome sh... 37 0.53
UniRef50_Q3UX10 Cluster: In vitro fertilized eggs cDNA, RIKEN fu... 36 0.92
UniRef50_Q3SEF9 Cluster: Alpha-tubulin,putative; n=1; Paramecium... 35 2.8
UniRef50_A4HVG1 Cluster: Alpha tubulin; n=2; Leishmania|Rep: Alp... 34 3.7
UniRef50_A4H729 Cluster: Alpha tubulin; n=5; Trypanosomatidae|Re... 33 6.5
UniRef50_A2G018 Cluster: Putative uncharacterized protein; n=3; ... 33 6.5
UniRef50_A2DG91 Cluster: Putative uncharacterized protein; n=1; ... 33 6.5
UniRef50_Q9XFV1 Cluster: Putative uncharacterized protein; n=1; ... 33 8.6
>UniRef50_Q4SEQ2 Cluster: Chromosome 3 SCAF14614, whole genome
shotgun sequence; n=2; Euteleostomi|Rep: Chromosome 3
SCAF14614, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 407
Score = 41.9 bits (94), Expect = 0.019
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 712 TQRECISVHVGQAGVQIGN 768
TQRECIS+HVGQAG QIGN
Sbjct: 5 TQRECISIHVGQAGAQIGN 23
>UniRef50_UPI00005A03AE Cluster: PREDICTED: similar to tubulin,
alpha 1; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to tubulin, alpha 1 - Canis familiaris
Length = 300
Score = 41.1 bits (92), Expect = 0.032
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +1
Query: 712 TQRECISVHVGQAGVQIGN 768
T RECIS+HVGQAGVQIGN
Sbjct: 44 TTRECISIHVGQAGVQIGN 62
>UniRef50_Q7PUE2 Cluster: ENSANGP00000013927; n=2; Anopheles
gambiae|Rep: ENSANGP00000013927 - Anopheles gambiae str.
PEST
Length = 89
Score = 40.7 bits (91), Expect = 0.043
Identities = 20/27 (74%), Positives = 20/27 (74%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGNGLLGSFTAWS 798
RECISVHVGQAGVQIGN T WS
Sbjct: 1 RECISVHVGQAGVQIGNACW--CTVWS 25
>UniRef50_Q4S6A2 Cluster: Chromosome 9 SCAF14729, whole genome
shotgun sequence; n=6; Euteleostomi|Rep: Chromosome 9
SCAF14729, whole genome shotgun sequence - Tetraodon
nigroviridis (Green puffer)
Length = 416
Score = 39.5 bits (88), Expect = 0.099
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RECIS+HVGQAGVQIGN
Sbjct: 3 RECISIHVGQAGVQIGN 19
>UniRef50_Q8N532 Cluster: TUBA1C protein; n=9; Amniota|Rep: TUBA1C
protein - Homo sapiens (Human)
Length = 325
Score = 39.5 bits (88), Expect = 0.099
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RECIS+HVGQAGVQIGN
Sbjct: 2 RECISIHVGQAGVQIGN 18
>UniRef50_P68363 Cluster: Tubulin alpha-1B chain; n=970;
Eukaryota|Rep: Tubulin alpha-1B chain - Homo sapiens
(Human)
Length = 451
Score = 39.5 bits (88), Expect = 0.099
Identities = 16/17 (94%), Positives = 17/17 (100%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RECIS+HVGQAGVQIGN
Sbjct: 2 RECISIHVGQAGVQIGN 18
>UniRef50_Q6AU00 Cluster: Alpha tubulin; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Alpha tubulin - Oryza sativa subsp.
japonica (Rice)
Length = 195
Score = 38.3 bits (85), Expect = 0.23
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RECIS+H+GQAG+Q+GN
Sbjct: 2 RECISIHIGQAGIQVGN 18
>UniRef50_Q3HRW7 Cluster: Alpha-tubulin-like protein; n=3;
Eukaryota|Rep: Alpha-tubulin-like protein - Solanum
tuberosum (Potato)
Length = 237
Score = 38.3 bits (85), Expect = 0.23
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RECIS+H+GQAG+Q+GN
Sbjct: 2 RECISIHIGQAGIQVGN 18
>UniRef50_Q4S633 Cluster: Chromosome 9 SCAF14729, whole genome
shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
Chromosome 9 SCAF14729, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 404
Score = 37.1 bits (82), Expect = 0.53
Identities = 15/18 (83%), Positives = 17/18 (94%)
Frame = +1
Query: 715 QRECISVHVGQAGVQIGN 768
QRE +S+HVGQAGVQIGN
Sbjct: 2 QREVVSIHVGQAGVQIGN 19
>UniRef50_Q3UX10 Cluster: In vitro fertilized eggs cDNA, RIKEN
full-length enriched library, clone:7420443F16
product:similar to Alpha tubulin; n=4; Murinae|Rep: In
vitro fertilized eggs cDNA, RIKEN full-length enriched
library, clone:7420443F16 product:similar to Alpha
tubulin - Mus musculus (Mouse)
Length = 446
Score = 36.3 bits (80), Expect = 0.92
Identities = 13/17 (76%), Positives = 17/17 (100%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
REC+S+H+GQAGVQIG+
Sbjct: 2 RECLSIHIGQAGVQIGD 18
>UniRef50_Q3SEF9 Cluster: Alpha-tubulin,putative; n=1; Paramecium
tetraurelia|Rep: Alpha-tubulin,putative - Paramecium
tetraurelia
Length = 551
Score = 34.7 bits (76), Expect = 2.8
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGNGL 774
RE IS+H+GQAG+QIGN L
Sbjct: 2 REIISLHIGQAGLQIGNSL 20
>UniRef50_A4HVG1 Cluster: Alpha tubulin; n=2; Leishmania|Rep: Alpha
tubulin - Leishmania infantum
Length = 327
Score = 34.3 bits (75), Expect = 3.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 703 SFITQRECISVHVGQAGVQIGN 768
SF RE I +H+GQAG Q+GN
Sbjct: 89 SFSAMREAICIHIGQAGCQVGN 110
>UniRef50_A4H729 Cluster: Alpha tubulin; n=5; Trypanosomatidae|Rep:
Alpha tubulin - Leishmania braziliensis
Length = 267
Score = 33.5 bits (73), Expect = 6.5
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +1
Query: 697 SFSFI-TQRECISVHVGQAGVQIGN 768
S SF T RE I +H+GQAG Q+GN
Sbjct: 28 SLSFSPTMREAICIHIGQAGCQVGN 52
>UniRef50_A2G018 Cluster: Putative uncharacterized protein; n=3;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 704
Score = 33.5 bits (73), Expect = 6.5
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = -3
Query: 566 NKAAYYLEHFIFNTDDITGSNEIIDHVSVTNMHLLIKIEVSKETFQLTYLNSLNYFVANK 387
N A+ L T T +I +VS +HLL ++++K+T N +++F++
Sbjct: 313 NHASVILSFLSQATIAYTNCGSVIPYVSSIALHLLANVQIAKQTDSQLTENIVSFFISAA 372
Query: 386 IRTTKGVVA 360
T KG+ A
Sbjct: 373 NSTGKGMGA 381
>UniRef50_A2DG91 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 439
Score = 33.5 bits (73), Expect = 6.5
Identities = 25/77 (32%), Positives = 40/77 (51%)
Frame = -3
Query: 524 DDITGSNEIIDHVSVTNMHLLIKIEVSKETFQLTYLNSLNYFVANKIRTTKGVVAAP*TR 345
+ I + I +SVTNM+L +I+ SKE ++L L S N ++I + + A
Sbjct: 66 EQINSLQKEIQQLSVTNMNLETQIDESKEQYRL--LQSQNKVQESQISQLQSELTA---L 120
Query: 344 PQKRRQTEFNRNKKRLN 294
+K+ QTE N K + N
Sbjct: 121 KKKQSQTEKNYGKNQTN 137
>UniRef50_Q9XFV1 Cluster: Putative uncharacterized protein; n=1;
Chlamydomonas sp. HS-5|Rep: Putative uncharacterized
protein - Chlamydomonas sp. HS-5
Length = 91
Score = 33.1 bits (72), Expect = 8.6
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+H+GQAG Q+GN
Sbjct: 2 REAISIHIGQAGCQVGN 18
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,594,344
Number of Sequences: 1657284
Number of extensions: 14691012
Number of successful extensions: 31160
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 30223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31159
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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