Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30248
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   5.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   6.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.9  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 184 VYVMTATFDKCQLKFERLSL*KISNSSFVSISQWLSKFSRFLFRLNSV 327
           V ++       ++KF    + KIS S   S    L+ F   LF+   +
Sbjct: 341 VEILAVQVSNKKIKFSSFGMLKISRSLLTSFGGALTTFLVILFQYGGI 388


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 476 NMHLLIKIEVSKETFQLTYLNSLNYF 399
           NMHLL  + +   T  L +L  + YF
Sbjct: 190 NMHLLFLLCLDYFTLHLLFLPCIYYF 215


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/25 (28%), Positives = 16/25 (64%)
 Frame = +2

Query: 695  DPFPLLHSVSASLYTLAKPESRLVM 769
            + +PLL +++  L   AKP+ + ++
Sbjct: 2177 EEYPLLRTINRVLRGYAKPDPKCIL 2201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,305
Number of Sequences: 336
Number of extensions: 3866
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)