Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30248
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    36   0.007
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    34   0.028
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.4  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    27   2.4  
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    27   2.4  
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |...    26   5.6  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    26   7.4  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    26   7.4  
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|...    25   9.7  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 16/17 (94%), Positives = 16/17 (94%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE ISVHVGQAGVQIGN
Sbjct: 2   REVISVHVGQAGVQIGN 18


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE IS+HVGQAG QIGN
Sbjct: 2   REIISIHVGQAGTQIGN 18


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 97  LFHFFNFKFTSIYFTKFMASC 159
           LF FF+F FTS++F  F   C
Sbjct: 116 LFSFFSFLFTSLHFNFFFRLC 136


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/67 (25%), Positives = 34/67 (50%)
 Frame = -3

Query: 566  NKAAYYLEHFIFNTDDITGSNEIIDHVSVTNMHLLIKIEVSKETFQLTYLNSLNYFVANK 387
            +K    L+ +  ++++   SN +   VS+ N+ L  +I++S   FQL Y      F+   
Sbjct: 894  DKGILQLKKYSLSSEEDFNSNGLSRTVSL-NLLLYERIQLSDALFQLGYTTVSLGFIMQN 952

Query: 386  IRTTKGV 366
            ++  KG+
Sbjct: 953  LKVIKGL 959


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 590 HHVTLSVFNKAAYYLEHFIFNTDDI 516
           H V LS+ NK     E ++F+TD I
Sbjct: 78  HQVALSIINKEQREEERYVFSTDSI 102


>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 482 VTNMHLLIKIEVSKETFQLTYLNSLNYFVANKIRTTKGV 366
           +T+++ LI +  +KETF +   NSL+  ++       G+
Sbjct: 591 ITHLNRLITLTPNKETFTINLANSLSLCISRPATWNLGI 629


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1372

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 493 SMISF-EPVISSVLKMKCSR*YAALLNTESVTW 588
           S+IS+ E +  + LK+K     A  L TESVTW
Sbjct: 176 SVISYIEKLSCTPLKLKYVESLAVALRTESVTW 208


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 747 LANVYRDALTLCNKGKGSDNTILI 676
           L NV +D L LC   +G DN  ++
Sbjct: 518 LVNVIKDLLGLCEMKRGKDNKAVV 541


>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 735 TRWPSRSPDW*WPAGELYC 791
           T+WPS  PD     G LYC
Sbjct: 120 TQWPSEQPDNGVSVGGLYC 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,732
Number of Sequences: 5004
Number of extensions: 64662
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)