Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30248
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788...    38   0.007
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257...    38   0.007
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918...    34   0.12 
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    34   0.12 
08_01_0092 + 673271-673452,673546-673621,674043-674104,674504-67...    29   3.3  

>11_02_0058 +
           7879859-7879951,7880844-7881078,7881165-7881535,
           7881648-7882304
          Length = 451

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+H+GQAG+Q+GN
Sbjct: 2   RECISIHIGQAGIQVGN 18


>03_05_0974 +
           29324025-29324117,29325064-29325298,29325385-29325755,
           29325864-29326520
          Length = 451

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+H+GQAG+Q+GN
Sbjct: 2   RECISIHIGQAGIQVGN 18


>07_03_0994 +
           23190344-23190456,23191367-23191581,23191663-23191862,
           23192420-23192928,23193048-23193363
          Length = 450

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE IS+H+GQAG+Q+GN
Sbjct: 2   REIISIHIGQAGIQVGN 18


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE IS+H+GQAG+Q+GN
Sbjct: 2   REIISIHIGQAGIQVGN 18


>08_01_0092 +
           673271-673452,673546-673621,674043-674104,674504-674606,
           674811-674852,674962-675123
          Length = 208

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 617 R*IYGER*NHHVTLSVFNKAAYYLEHFIFN 528
           R IYG R N H+T+   N    YLE +++N
Sbjct: 107 RYIYGNRANEHMTVEELNALERYLEIWMYN 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,247,612
Number of Sequences: 37544
Number of extensions: 386383
Number of successful extensions: 761
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)