Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30248
         (817 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)                      45   6e-05
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   8e-04
SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)                     40   0.002
SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)                     40   0.003
SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)                     40   0.003
SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.006
SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.006
SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)                      38   0.007

>SB_2674| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 1036

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +1

Query: 697 SFSFITQRECISVHVGQAGVQIGN 768
           +F  I QRECISVHVGQAGVQIGN
Sbjct: 59  TFILILQRECISVHVGQAGVQIGN 82



 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 715 QRECISVHVGQAGVQIGN 768
           QRECIS+HVGQAGVQIGN
Sbjct: 513 QRECISIHVGQAGVQIGN 530



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 712 TQRECISVHVGQAGVQIGN 768
           T RECIS+HVGQAGVQIGN
Sbjct: 585 TVRECISIHVGQAGVQIGN 603


>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1231

 Score = 41.5 bits (93), Expect = 8e-04
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 715 QRECISVHVGQAGVQIGN 768
           QRECIS+HVGQAGVQIGN
Sbjct: 372 QRECISIHVGQAGVQIGN 389



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 715 QRECISVHVGQAGVQIGN 768
           +RECISVHVGQAGVQ+GN
Sbjct: 805 ERECISVHVGQAGVQMGN 822


>SB_42897| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +1

Query: 703 SFITQRECISVHVGQAGVQIGN 768
           S  T REC+S+HVGQAGVQIGN
Sbjct: 192 SIQTMRECLSIHVGQAGVQIGN 213


>SB_19437| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 885

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 715 QRECISVHVGQAGVQIGN 768
           +RECIS+HVGQAGVQIGN
Sbjct: 434 ERECISIHVGQAGVQIGN 451



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+HVGQAGVQIGN
Sbjct: 2   RECISIHVGQAGVQIGN 18


>SB_28561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/17 (100%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECISVHVGQAGVQIGN
Sbjct: 2   RECISVHVGQAGVQIGN 18


>SB_48961| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 536

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+HVGQAGVQIGN
Sbjct: 2   RECISIHVGQAGVQIGN 18


>SB_34400| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 380

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+HVGQAGVQIGN
Sbjct: 1   RECISIHVGQAGVQIGN 17


>SB_22192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 452

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECISVHVGQAGVQ+GN
Sbjct: 2   RECISVHVGQAGVQMGN 18


>SB_22191| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 38.7 bits (86), Expect = 0.006
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = +1

Query: 715 QRECISVHVGQAGVQIGN 768
           +REC+S+HVGQAGVQ+GN
Sbjct: 419 ERECVSIHVGQAGVQMGN 436


>SB_2003| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 451

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 15/17 (88%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+HVGQAGVQ+GN
Sbjct: 2   RECISIHVGQAGVQMGN 18


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,554,652
Number of Sequences: 59808
Number of extensions: 454490
Number of successful extensions: 946
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)