Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30248
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical pr... 37 0.015
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 36 0.046
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 36 0.046
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 36 0.046
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 36 0.046
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 36 0.046
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 36 0.046
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 36 0.046
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 36 0.046
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 35 0.061
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 35 0.061
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 35 0.061
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 35 0.061
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 35 0.080
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 34 0.11
Z73972-7|CAA98262.2| 305|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical p... 28 9.2
DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein. 28 9.2
>Z37140-7|CAA85497.2| 452|Caenorhabditis elegans Hypothetical
protein ZK899.4 protein.
Length = 452
Score = 37.1 bits (82), Expect = 0.015
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
REC+S+H+GQAG QIGN
Sbjct: 6 RECVSIHIGQAGAQIGN 22
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 8 REVISIHVGQAGVQIGN 24
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 35.5 bits (78), Expect = 0.046
Identities = 15/17 (88%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQIGN
Sbjct: 2 REVISIHVGQAGVQIGN 18
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+H+GQAGVQIGN
Sbjct: 2 REVISIHIGQAGVQIGN 18
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+H+GQAGVQIGN
Sbjct: 1 REVISIHIGQAGVQIGN 17
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+H+GQAGVQIGN
Sbjct: 2 REVISIHIGQAGVQIGN 18
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+H+GQAGVQIGN
Sbjct: 2 REVISIHIGQAGVQIGN 18
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.080
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE +S+H+GQAGVQIGN
Sbjct: 2 REIVSIHIGQAGVQIGN 18
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 34.3 bits (75), Expect = 0.11
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +1
Query: 718 RECISVHVGQAGVQIGN 768
RE IS+HVGQAGVQ+GN
Sbjct: 7 REVISIHVGQAGVQMGN 23
>Z73972-7|CAA98262.2| 305|Caenorhabditis elegans Hypothetical
protein F15H10.5 protein.
Length = 305
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = -3
Query: 524 DDITGSNEIIDHVSVTNMHLLIKIEVSKETFQLTYLN 414
DDI+ +N ++ HVS T + ++I++ K F++T N
Sbjct: 220 DDISVNNGLLYHVSETELLRRLEIDIKKCFFEVTERN 256
>Z75711-10|CAK55176.1| 400|Caenorhabditis elegans Hypothetical
protein K02B12.4b protein.
Length = 400
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 219 LTLIERGRHYVHKMVALPTGT*SHEFSKIYRSKFKIKEMK*LSNSPF*FEFFSMLK 52
L+L++ RH K V+L TGT H R+K + + L P + F LK
Sbjct: 53 LSLLKLARHIHRKYVSLNTGT-CHVIGDSIRTKISTRVHEVLDGKPPYIDLFDPLK 107
>DQ185512-1|ABA28304.1| 400|Caenorhabditis elegans AXL-1 protein.
Length = 400
Score = 27.9 bits (59), Expect = 9.2
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -2
Query: 219 LTLIERGRHYVHKMVALPTGT*SHEFSKIYRSKFKIKEMK*LSNSPF*FEFFSMLK 52
L+L++ RH K V+L TGT H R+K + + L P + F LK
Sbjct: 53 LSLLKLARHIHRKYVSLNTGT-CHVIGDSIRTKISTRVHEVLDGKPPYIDLFDPLK 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,993
Number of Sequences: 27780
Number of extensions: 355192
Number of successful extensions: 744
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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