Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30248
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    23   3.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  

>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 767 MACWGALLPGAPASQ 811
           + CW +LLP +P +Q
Sbjct: 338 VGCWNSLLPYSPENQ 352


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 303 TTKLTKPLGY*NKRRIRDFSQTQSFE 226
           +T +    GY + RR RDF+  +S++
Sbjct: 19  STYVVSVAGYKHSRRHRDFTVAESYD 44


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -3

Query: 344 PQKRRQTEFNRNKKRLNLLSHW 279
           P+K+++ E +  K+    LS W
Sbjct: 211 PEKKKEDEIDEGKESKTKLSQW 232


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 324 RLPTFLWSSSRCRYHALGRSNLVS 395
           +L  F+W SSR  + A     LV+
Sbjct: 732 KLMAFIWDSSRLEFEAAQDCELVT 755


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,285
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)