Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30248
         (817 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide...    38   0.006
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide...    38   0.006
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id...    38   0.006
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne...    38   0.006
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne...    34   0.098
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne...    34   0.098
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide...    34   0.098
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ...    28   8.5  

>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+H+GQAG+Q+GN
Sbjct: 2   RECISIHIGQAGIQVGN 18


>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
           identical to SP|P29511 Tubulin alpha-6 chain
           {Arabidopsis thaliana}
          Length = 427

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+H+GQAG+Q+GN
Sbjct: 2   RECISIHIGQAGIQVGN 18


>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
           identical to tubulin alpha-2/alpha-4 chain SP|P29510
           GB:P29510 from [Arabidopsis thaliana]
          Length = 450

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+H+GQAG+Q+GN
Sbjct: 2   RECISIHIGQAGIQVGN 18


>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
           nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
           chain from [Arabidopsis thaliana]
          Length = 450

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/17 (76%), Positives = 17/17 (100%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RECIS+H+GQAG+Q+GN
Sbjct: 2   RECISIHIGQAGIQVGN 18


>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE IS+H+GQAG+Q+GN
Sbjct: 2   REIISIHIGQAGIQVGN 18


>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
           nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
           chain {Arabidopsis thaliana}
          Length = 450

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE IS+H+GQAG+Q+GN
Sbjct: 2   REIISIHIGQAGIQVGN 18


>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
           identical to SP|P11139 Tubulin alpha-1 chain
           {Arabidopsis thaliana}
          Length = 450

 Score = 34.3 bits (75), Expect = 0.098
 Identities = 12/17 (70%), Positives = 16/17 (94%)
 Frame = +1

Query: 718 RECISVHVGQAGVQIGN 768
           RE IS+H+GQAG+Q+GN
Sbjct: 2   REIISIHIGQAGIQVGN 18


>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
           Exportin1 (XPO1) protein [Arabidopsis thaliana]
           GI:7671510; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -2

Query: 798 APGSKAPQQAITNLDSGLANVYRDALTLCNKGKGSDNTILI--NDSYGLGF**NYNTFL 628
           A GS +    +   +  L  V RD L+LC   KG DN  +I  N  Y +G    Y+ FL
Sbjct: 504 AIGSISGSMVVEQENRFLVMVIRDLLSLCEVVKGKDNKAVIASNIMYVVG---QYSRFL 559


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,501,288
Number of Sequences: 28952
Number of extensions: 321978
Number of successful extensions: 604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)