Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30247
(501 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212; Eukar... 109 3e-23
UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6; Eukar... 87 2e-16
UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1; Ostreoc... 85 8e-16
UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorc... 85 8e-16
UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2; ... 79 4e-14
UniRef50_Q4Q1D2 Cluster: 40S ribosomal protein S24e; n=4; Leishm... 75 1e-12
UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6; Eukaryo... 73 4e-12
UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24, puta... 71 1e-11
UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3; ... 71 2e-11
UniRef50_A2F0H5 Cluster: 40S ribosomal protein S24; n=3; Trichom... 70 3e-11
UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containin... 67 2e-10
UniRef50_A0BWM9 Cluster: Chromosome undetermined scaffold_132, w... 66 3e-10
UniRef50_Q9AW51 Cluster: 40S ribosomal protein S24; n=1; Guillar... 58 1e-07
UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal pr... 52 7e-06
UniRef50_Q8SR06 Cluster: 40S RIBOSOMAL PROTEIN S24; n=1; Encepha... 48 2e-04
UniRef50_P34582 Cluster: Uncharacterized protein T26G10.3; n=1; ... 42 0.006
UniRef50_Q9UY20 Cluster: 30S ribosomal protein S24e; n=4; Thermo... 42 0.006
UniRef50_A1RXC7 Cluster: 30S ribosomal protein S24e; n=1; Thermo... 41 0.018
UniRef50_Q1XFY8 Cluster: Putative uncharacterized protein; n=1; ... 40 0.031
UniRef50_A3H8R4 Cluster: 30S ribosomal protein S24e; n=1; Caldiv... 39 0.073
UniRef50_Q8ZV65 Cluster: 30S ribosomal protein S24e; n=4; Pyroba... 37 0.22
UniRef50_A0AE74 Cluster: Putative uncharacterized protein; n=1; ... 35 0.90
UniRef50_A2FEP6 Cluster: Putative uncharacterized protein; n=2; ... 34 2.1
UniRef50_Q9VT48 Cluster: CG8177-PA, isoform A; n=13; Diptera|Rep... 33 2.7
UniRef50_A4YIV8 Cluster: Ribosomal protein S24E-like protein; n=... 33 3.6
UniRef50_Q8TVD8 Cluster: 30S ribosomal protein S24e; n=1; Methan... 33 3.6
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 33 4.8
UniRef50_Q9KLM0 Cluster: 3-hydroxy-3-methylglutaryl CoA reductas... 32 6.3
UniRef50_Q22D17 Cluster: Protein kinase domain containing protei... 32 6.3
UniRef50_Q5KM71 Cluster: Expressed protein; n=2; Filobasidiella ... 32 6.3
UniRef50_Q08TA4 Cluster: Fibrillar collagen chain FAp1 alpha; n=... 32 8.3
>UniRef50_P62847 Cluster: 40S ribosomal protein S24; n=212;
Eukaryota|Rep: 40S ribosomal protein S24 - Homo sapiens
(Human)
Length = 133
Score = 109 bits (263), Expect = 3e-23
Identities = 51/60 (85%), Positives = 54/60 (90%)
Frame = +1
Query: 76 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 255
T TIRTRKFMTNRLL RKQMV DVLHPGK TV KTEIREKLAKMYK TPDV+FVFGF+T+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Score = 109 bits (263), Expect = 3e-23
Identities = 49/61 (80%), Positives = 55/61 (90%)
Frame = +3
Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 422
F+ FGGGK+TGF +IYD+LD AKK EPKHRLARHGLYEKK+ +RKQRKERKNRMKKVRG
Sbjct: 60 FRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRG 119
Query: 423 T 425
T
Sbjct: 120 T 120
>UniRef50_Q8LC83 Cluster: 40S ribosomal protein S24-2; n=6;
Eukaryota|Rep: 40S ribosomal protein S24-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 133
Score = 87.4 bits (207), Expect = 2e-16
Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Frame = +1
Query: 64 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 240
M+E TIRTR FMTNRLLARKQ V DVLHPG+ VSK E++EKLA+MY+V P+ +F F
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60
Query: 241 GFKTN 255
F+T+
Sbjct: 61 KFRTH 65
Score = 85.8 bits (203), Expect = 5e-16
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +3
Query: 240 RFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 419
+F+ FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+R
Sbjct: 61 KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
Query: 420 G 422
G
Sbjct: 121 G 121
>UniRef50_Q00V00 Cluster: 40S ribosomal protein S24; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S24 -
Ostreococcus tauri
Length = 134
Score = 85.0 bits (201), Expect = 8e-16
Identities = 39/67 (58%), Positives = 48/67 (71%)
Frame = +3
Query: 222 RCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKN 401
+C F+ FGGGKSTGF LIYD +D KKFEPKHRL R GL + + +RK KE+KN
Sbjct: 61 KCVSIFGFRTAFGGGKSTGFGLIYDNIDAFKKFEPKHRLIRAGLKDAVQKSRKNIKEKKN 120
Query: 402 RMKKVRG 422
R+KK+RG
Sbjct: 121 RVKKLRG 127
Score = 48.8 bits (111), Expect = 7e-05
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 20/70 (28%)
Frame = +1
Query: 103 MTNRLLARKQMV-----------CDVLHPGKPTVSK--------TEIREKLAKMYKVTPD 225
MTNRLL R+Q V CDVLHPG+ VSK E++EK+AKMY V+ +
Sbjct: 1 MTNRLLQRRQFVRLTNVFHQSQICDVLHPGRANVSKVRYIRGAGAELQEKIAKMYNVSDE 60
Query: 226 -VVFVFGFKT 252
V +FGF+T
Sbjct: 61 KCVSIFGFRT 70
>UniRef50_Q8MUB8 Cluster: 40S ribosomal protein S24; n=1; Clonorchis
sinensis|Rep: 40S ribosomal protein S24 - Clonorchis
sinensis
Length = 139
Score = 85.0 bits (201), Expect = 8e-16
Identities = 37/57 (64%), Positives = 48/57 (84%)
Frame = +1
Query: 85 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTN 255
IRTRKFM+NRLL R+QMV D+LHPG+ +S +IRE+LAK YK +PD+VF FGF+T+
Sbjct: 7 IRTRKFMSNRLLFRRQMVVDILHPGRCVLSLKDIRERLAKTYKTSPDMVFAFGFRTH 63
Score = 64.1 bits (149), Expect = 2e-09
Identities = 29/54 (53%), Positives = 39/54 (72%)
Frame = +3
Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 404
F+ FGGGKSTGFAL+YD+LD AKKFEP++RL R + P R++ +ER +
Sbjct: 60 FRTHFGGGKSTGFALVYDSLDHAKKFEPRYRLIRVKWVAGRHPQRQKVEERTQK 113
>UniRef50_A3BCP7 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 166
Score = 79.4 bits (187), Expect = 4e-14
Identities = 36/59 (61%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTN 255
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTH 69
Score = 61.7 bits (143), Expect(2) = 2e-13
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +3
Query: 219 SRCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 344
S C +F+ FGGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 2e-13
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 345 HGLYEKKRPTRKQRKERKNRMKKVRG 422
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>UniRef50_Q4Q1D2 Cluster: 40S ribosomal protein S24e; n=4;
Leishmania|Rep: 40S ribosomal protein S24e - Leishmania
major
Length = 137
Score = 74.5 bits (175), Expect = 1e-12
Identities = 34/60 (56%), Positives = 42/60 (70%)
Frame = +3
Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 422
F+ KFGGGK+TGF LIYD L K+FEP +R R G + + P RK KER+NR KK+RG
Sbjct: 67 FKTKFGGGKTTGFGLIYDDLASLKRFEPNYRKTRMGFGKARLPARKSVKERRNRNKKLRG 126
Score = 51.6 bits (118), Expect = 1e-05
Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +1
Query: 58 FKMSEGTATIRTRKFMTNRLLARKQMVCDVLHP-GKPTVSKTEIREKLAKMYKVTPDV-- 228
F+ + IRT +F N+LL RKQ + +V HP TV IR+KLA +YKV PD
Sbjct: 3 FQKKKAEVCIRTSQFKVNKLLNRKQFIVEVNHPHWCGTVPTQLIRKKLATLYKV-PDASQ 61
Query: 229 VFVFGFKT 252
V +FGFKT
Sbjct: 62 VSLFGFKT 69
>UniRef50_Q5CPN5 Cluster: 40s ribosomal protein s24; n=6;
Eukaryota|Rep: 40s ribosomal protein s24 -
Cryptosporidium parvum Iowa II
Length = 159
Score = 72.9 bits (171), Expect = 4e-12
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +3
Query: 219 SRCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPT-RKQRKER 395
+ C V F+ FGGG+S+GF +IY+ + KKFE ++R R G+ EK T RK RKE
Sbjct: 80 ANCIVLFGFKTAFGGGRSSGFCVIYNNISALKKFEHRYRQVRMGIAEKVTATGRKGRKET 139
Query: 396 KNRMKKVRGT 425
KNR KKVRGT
Sbjct: 140 KNRRKKVRGT 149
Score = 66.5 bits (155), Expect = 3e-10
Identities = 31/58 (53%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKT 252
T+R R+F+ N LLARKQ V DV+HP VSK++++ KLAK+YKV + + +FGFKT
Sbjct: 33 TVRVRQFLNNPLLARKQFVVDVIHPSLGGVSKSDLKAKLAKLYKVQDANCIVLFGFKT 90
>UniRef50_Q8I3R6 Cluster: 40S ribosomal subunit protein S24,
putative; n=1; Plasmodium falciparum 3D7|Rep: 40S
ribosomal subunit protein S24, putative - Plasmodium
falciparum (isolate 3D7)
Length = 133
Score = 70.9 bits (166), Expect = 1e-11
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKK-RPTRKQRKERKNRMKKVR 419
F+ FGGG++ GF LIY +D KKFE K+RL R GL +K+ + R+ KE KNR KKVR
Sbjct: 61 FKTLFGGGRTKGFGLIYKNVDAVKKFEKKYRLVREGLIDKETKAGRRASKELKNRRKKVR 120
Query: 420 GT 425
GT
Sbjct: 121 GT 122
Score = 68.1 bits (159), Expect = 1e-10
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKT 252
TIR +K+M+N LL RKQ ++LHP K +V+K E++E+LAKMYK+ + + +FGFKT
Sbjct: 6 TIRVKKYMSNPLLRRKQFALEILHPNKGSVAKKEVKERLAKMYKLNNVNTIVLFGFKT 63
>UniRef50_UPI0000498B4B Cluster: 40S ribosomal protein S24; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S24 - Entamoeba histolytica HM-1:IMSS
Length = 140
Score = 70.5 bits (165), Expect = 2e-11
Identities = 32/56 (57%), Positives = 40/56 (71%)
Frame = +3
Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMK 410
F K+GGGK++GFALIYDTL KKF PKH+L R GL +K + RK RKE K + +
Sbjct: 64 FVTKYGGGKTSGFALIYDTLSALKKFVPKHQLIRAGLDKKTKAPRKARKEHKKKWR 119
Score = 58.8 bits (136), Expect = 6e-08
Identities = 31/58 (53%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTP-DVVFVFGFKT 252
TIRTR + N LL RKQ+V D+ HPG TEI+EKLAKMYKV + + GF T
Sbjct: 9 TIRTRNLIVNPLLCRKQVVVDIYHPGIVQPKFTEIKEKLAKMYKVKDVQTIVLNGFVT 66
>UniRef50_A2F0H5 Cluster: 40S ribosomal protein S24; n=3;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein S24
- Trichomonas vaginalis G3
Length = 140
Score = 69.7 bits (163), Expect = 3e-11
Identities = 31/60 (51%), Positives = 41/60 (68%)
Frame = +3
Query: 246 QDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGT 425
+ KFGGG +TGF +YD+LD KK EPKHRL + GL EK + TR+ RK + + KV G+
Sbjct: 60 ETKFGGGHTTGFGFVYDSLDALKKTEPKHRLIKAGLAEKGKVTRRMRKNARRQKVKVWGS 119
Score = 50.4 bits (115), Expect = 2e-05
Identities = 21/57 (36%), Positives = 36/57 (63%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 252
++ RK++ N+LL RKQ V D+ H G ++ EI++++A K D+V +FG +T
Sbjct: 5 SVHIRKYIVNKLLDRKQFVIDMQHLGAKAPTRDEIKDEVASRLKANKDLVVIFGLET 61
>UniRef50_UPI000150A155 Cluster: Ribosomal protein S24e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal protein S24e containing protein - Tetrahymena
thermophila SB210
Length = 149
Score = 66.9 bits (156), Expect = 2e-10
Identities = 32/59 (54%), Positives = 40/59 (67%)
Frame = +1
Query: 76 TATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 252
T IRT+K + N LL+R+Q+ DVLHP PT SK +IRE+LAK KV V V+GF T
Sbjct: 2 TIVIRTKKILVNPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARNVVVYGFST 60
Score = 58.8 bits (136), Expect = 6e-08
Identities = 26/60 (43%), Positives = 38/60 (63%)
Frame = +3
Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 422
F ++GGGKSTGFAL+YD K+EP +RL + + +K TR+ KE K ++K+ G
Sbjct: 58 FSTQYGGGKSTGFALVYDNQQYLLKYEPNYRLRKVKILGEKPNTRRSFKELKRKIKRTSG 117
>UniRef50_A0BWM9 Cluster: Chromosome undetermined scaffold_132,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_132,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 182
Score = 66.5 bits (155), Expect = 3e-10
Identities = 31/56 (55%), Positives = 39/56 (69%)
Frame = +3
Query: 255 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 422
FGG ++TGFALIYDT KFEPK RL R G+ K+ +RK KE K+++KK RG
Sbjct: 95 FGGNRTTGFALIYDTQQYLLKFEPKFRLRRRGIIPKRDGSRKGWKEVKSKLKKTRG 150
Score = 45.2 bits (102), Expect = 8e-04
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 76 TATIRTRKFMTNRLLA-RKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 252
T ++TRK + + L R+Q+ ++LHP KPT S+ + ++LA YK V V+G +T
Sbjct: 34 TFIVKTRKVLLKQSLEIRRQLSVELLHPNKPTPSQESVVKELASKYKADERNVVVYGLRT 93
>UniRef50_Q9AW51 Cluster: 40S ribosomal protein S24; n=1; Guillardia
theta|Rep: 40S ribosomal protein S24 - Guillardia theta
(Cryptomonas phi)
Length = 129
Score = 58.0 bits (134), Expect = 1e-07
Identities = 27/59 (45%), Positives = 39/59 (66%)
Frame = +3
Query: 246 QDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 422
++ FGG K + F IY L+ A+ EPKHRL ++ L + + + KQRKE+KN+MKK G
Sbjct: 65 KNNFGGFKCSAFVYIYYNLEAARVNEPKHRLIKNNLMKLELQSSKQRKEKKNKMKKYFG 123
Score = 48.0 bits (109), Expect = 1e-04
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTN 255
++T+KF N LL RKQ + + K +SK +R +L+K Y++ P ++F+FG K N
Sbjct: 10 LKTKKFKNNPLLKRKQFLLSIDRKKKFNISKEWLRIELSKYYRIKDPSLIFIFGLKNN 67
>UniRef50_Q91834 Cluster: Fragment of Xenopus laevis ribosomal
protein S19; n=1; Xenopus laevis|Rep: Fragment of
Xenopus laevis ribosomal protein S19 - Xenopus laevis
(African clawed frog)
Length = 142
Score = 52.0 bits (119), Expect = 7e-06
Identities = 24/61 (39%), Positives = 40/61 (65%)
Frame = -1
Query: 258 RICLETEYEHYIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANSR 79
++ +T++++ I LVH +L +D L D F+WM I +HLLA Q+SV H+L+ ++S
Sbjct: 72 KVSPKTKHKNNIWGCLVHLCQLFSDFSLGDSSFAWMKYINDHLLALQKSVCHKLSCSDSH 131
Query: 78 C 76
C
Sbjct: 132 C 132
Score = 41.9 bits (94), Expect = 0.008
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Frame = -2
Query: 458 LLGGRTYFRFLGTADLLHSVLTFFTLFARGPLLLVQAVAG*PVLGLELLGQIECVVDQSE 279
LL T+ F T LHSVL FFTL + LL++ + G V L L ++ VVD ++
Sbjct: 5 LLFTSTHICFGCTPYFLHSVLAFFTLLSGSLFLLIKPMLGKSVFRLILFCIVKRVVDHAK 64
Query: 278 SS*LATSEFVLK-PNTNTTSGVTLYILASFSRISV 177
+ ATS+ K + N G +++ FS S+
Sbjct: 65 ACSFATSKVSPKTKHKNNIWGCLVHLCQLFSDFSL 99
>UniRef50_Q8SR06 Cluster: 40S RIBOSOMAL PROTEIN S24; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S24
- Encephalitozoon cuniculi
Length = 126
Score = 47.6 bits (108), Expect = 2e-04
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +1
Query: 109 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFK 249
NRLL+RK++ HPG P SK EIREK++++Y+ D V V K
Sbjct: 8 NRLLSRKELDVVAYHPGMPIPSKEEIREKISELYQTKKDNVVVMDLK 54
>UniRef50_P34582 Cluster: Uncharacterized protein T26G10.3; n=1;
Caenorhabditis elegans|Rep: Uncharacterized protein
T26G10.3 - Caenorhabditis elegans
Length = 91
Score = 42.3 bits (95), Expect = 0.006
Identities = 16/33 (48%), Positives = 23/33 (69%)
Frame = +1
Query: 133 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 231
MV +V+ PG+PT K +IREK+A Y + PD +
Sbjct: 1 MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33
>UniRef50_Q9UY20 Cluster: 30S ribosomal protein S24e; n=4;
Thermococcaceae|Rep: 30S ribosomal protein S24e -
Pyrococcus abyssi
Length = 99
Score = 42.3 bits (95), Expect = 0.006
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +1
Query: 85 IRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 237
I+ + N+L+ RK++ ++ HPG+PT S+ +++ KL M + P+ +
Sbjct: 3 IKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPETTVI 53
>UniRef50_A1RXC7 Cluster: 30S ribosomal protein S24e; n=1;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein
S24e - Thermofilum pendens (strain Hrk 5)
Length = 106
Score = 40.7 bits (91), Expect = 0.018
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 180 RDP*EARQNVQGYSRCSVRIR-FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLY 356
RD EA +N+ G ++ +R ++G G S IYD+ K FEPKH L R+GL
Sbjct: 37 RDVAEALRNMLGTGGSAIVVRKLVTRYGQGVSEALIHIYDSDVKMKMFEPKHILRRNGLI 96
Query: 357 EKKRPTRKQ 383
+++ +++
Sbjct: 97 QEQEAKKQE 105
>UniRef50_Q1XFY8 Cluster: Putative uncharacterized protein; n=1;
Caenorhabditis elegans|Rep: Putative uncharacterized
protein - Caenorhabditis elegans
Length = 204
Score = 39.9 bits (89), Expect = 0.031
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 276 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 404
GF L+YDT D A K++P+H + H R + +RKE++ R
Sbjct: 54 GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95
>UniRef50_A3H8R4 Cluster: 30S ribosomal protein S24e; n=1;
Caldivirga maquilingensis IC-167|Rep: 30S ribosomal
protein S24e - Caldivirga maquilingensis IC-167
Length = 155
Score = 38.7 bits (86), Expect = 0.073
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +1
Query: 73 GTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 237
G ++ + N LL RK++ V H G PT + ++RE+LAK P++ +V
Sbjct: 36 GKVQVKVIEQFNNPLLQRKEVKAIVYHVGLPTPQRLQLREELAKALGSNPELTYV 90
>UniRef50_Q8ZV65 Cluster: 30S ribosomal protein S24e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S24e -
Pyrobaculum aerophilum
Length = 121
Score = 37.1 bits (82), Expect = 0.22
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Frame = +3
Query: 240 RFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARH------GLYEKKRPTRKQRKERKN 401
R + +FG G+S +Y+ +A+ EP + LAR+ L E+ + R +R+E+K
Sbjct: 58 RIKTEFGRGRSLAEVHVYNDSKIARVIEPLYILARNLGEEGKKLLEEAKKRRNERREKKK 117
Query: 402 RMKK 413
R KK
Sbjct: 118 RKKK 121
Score = 34.7 bits (76), Expect = 1.2
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +1
Query: 109 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 252
N+LLAR++++ + +H T ++ +RE +AK + VFV KT
Sbjct: 14 NKLLARRELLVEAVHQNASTPTRQSVREWVAKQLGIDISNVFVRRIKT 61
>UniRef50_A0AE74 Cluster: Putative uncharacterized protein; n=1;
Streptomyces ambofaciens ATCC 23877|Rep: Putative
uncharacterized protein - Streptomyces ambofaciens ATCC
23877
Length = 135
Score = 35.1 bits (77), Expect = 0.90
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = -1
Query: 393 VLYAVCAWASSSRTGRGGLTCAWARTSWPDRVCRRSKRIQLTCHLRICLETEY 235
V A+ A A+SSR G L+ WA+ SW RR+ R+ T + R+ L Y
Sbjct: 27 VTLAILALAASSRHGMPALSYYWAKMSW-----RRAARVDATSYRRVLLPHPY 74
>UniRef50_A2FEP6 Cluster: Putative uncharacterized protein; n=2;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 326
Score = 33.9 bits (74), Expect = 2.1
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 281 RFDLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGPRYQE 430
+ +RH R+ + + + PP+PV+E E + A EQ EE P +E
Sbjct: 110 KITVRHPRNTEPFKELNPLLPPKPVKEGEEEEEKAEEEEEQKEEEPENEE 159
>UniRef50_Q9VT48 Cluster: CG8177-PA, isoform A; n=13; Diptera|Rep:
CG8177-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 1268
Score = 33.5 bits (73), Expect = 2.7
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = +3
Query: 252 KFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 413
+FGG K +L YD + E K R +RH Y +++ + + E KN++++
Sbjct: 132 QFGGKKKIPPSLSYDEQPTDQSHERKRRRSRHQYYRQRKFSHQDSVEPKNKLEE 185
>UniRef50_A4YIV8 Cluster: Ribosomal protein S24E-like protein; n=1;
Metallosphaera sedula DSM 5348|Rep: Ribosomal protein
S24E-like protein - Metallosphaera sedula DSM 5348
Length = 113
Score = 33.1 bits (72), Expect = 3.6
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 109 NRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFV 237
N+++ RK++ V H G PT S+ +IR+ ++ D+V +
Sbjct: 23 NKVIGRKEIKIKVYHIGSPTPSRADIRKAISSFIGAKEDLVVI 65
>UniRef50_Q8TVD8 Cluster: 30S ribosomal protein S24e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S24e -
Methanopyrus kandleri
Length = 116
Score = 33.1 bits (72), Expect = 3.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 240 RFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARH 347
R + +FG ++ G+A IY +++ + EP+H + RH
Sbjct: 55 RMESEFGKRETKGYAKIYKSMEHLEDIEPEHMVERH 90
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 32.7 bits (71), Expect = 4.8
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = -1
Query: 216 NLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHEL-ASANSRCSFTHFELFSIIR 40
NL HF LLT +SW ++ ++R Q+V EL +SA S T F LFS++
Sbjct: 332 NLQHFS-LLTASNRPSNSYSWNGSLWQRFISRLQTVAAELKSSAIFTSSITTF-LFSLLF 389
Query: 39 RLHARVSAKTR 7
+ R SA +R
Sbjct: 390 QYFRRKSAASR 400
>UniRef50_Q9KLM0 Cluster: 3-hydroxy-3-methylglutaryl CoA reductase;
n=44; Proteobacteria|Rep: 3-hydroxy-3-methylglutaryl CoA
reductase - Vibrio cholerae
Length = 436
Score = 32.3 bits (70), Expect = 6.3
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Frame = -1
Query: 291 RSKRIQLTCHLRICLETEYEHYIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQS 112
R K++ HL L +Y H +V FG++ T G G + AN L A +
Sbjct: 277 RGKKVSAEVHLSAELVKKYLHTTPEQMVQFGQMTTVGGALSGAIGVNAHYANALAALYIA 336
Query: 111 VGHELAS-ANSRCSFTHFEL 55
G + A A S T E+
Sbjct: 337 CGQDAACVAESAIGMTRMEI 356
>UniRef50_Q22D17 Cluster: Protein kinase domain containing protein;
n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
domain containing protein - Tetrahymena thermophila
SB210
Length = 389
Score = 32.3 bits (70), Expect = 6.3
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = -2
Query: 308 QIECVVDQSESS*LATSEFVLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTIC 129
QI C ++QS+ L + + N N + + +LAS S L + +P KT Q+IC
Sbjct: 161 QINCDINQSKFLTLIKANQSNQTNQNYYQSIKVILLASLLA-SYLFSFIYPQIKTIQSIC 219
Query: 128 LRANNLL 108
L NL+
Sbjct: 220 LIHLNLI 226
>UniRef50_Q5KM71 Cluster: Expressed protein; n=2; Filobasidiella
neoformans|Rep: Expressed protein - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 548
Score = 32.3 bits (70), Expect = 6.3
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Frame = -1
Query: 423 YRGPSSFCSYVLYAVC--AWASSSRTGRGGLTCAWARTSWP 307
Y S C L+A C WA +++ +TC W R WP
Sbjct: 452 YDDSLSGCGRPLHAECFRMWAVTAKKSGKDVTCVWCRNEWP 492
>UniRef50_Q08TA4 Cluster: Fibrillar collagen chain FAp1 alpha; n=1;
Stigmatella aurantiaca DW4/3-1|Rep: Fibrillar collagen
chain FAp1 alpha - Stigmatella aurantiaca DW4/3-1
Length = 945
Score = 31.9 bits (69), Expect = 8.3
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 212 RLLPM*CSYSVSRQIRRWQVNWIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*R 391
R P C+ + +R+I+RW + + R R E SPP R + A A+ A R
Sbjct: 527 RRAPPECTVAEARRIQRWPLGARLGEARSPRGRDEPARSGSPSPPAHQRPDPAGARAARR 586
Query: 392 T 394
T
Sbjct: 587 T 587
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,223,499
Number of Sequences: 1657284
Number of extensions: 10338521
Number of successful extensions: 30995
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 29563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30874
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29691847201
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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