Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30247
         (501 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   1.2  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.2  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    23   1.2  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   4.7  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   6.2  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +3

Query: 291 YDTLDLAKKFEPKHRLAR-------HGLYEKKRPTRKQRKERKNRMKK 413
           Y TL+L K+F   H L R       H L   +R  +   + R+ ++KK
Sbjct: 233 YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 280


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 485 IHLYLAFTSLLGGRTYFRFLGTADLLHSVLTFFTLF 378
           IHL++    L+G + +        L HSV  F T+F
Sbjct: 778 IHLFVKCVFLMGYQIFDWVQKEQSLAHSVGVFLTIF 813


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +3

Query: 291 YDTLDLAKKFEPKHRLAR-------HGLYEKKRPTRKQRKERKNRMKK 413
           Y TL+L K+F   H L R       H L   +R  +   + R+ ++KK
Sbjct: 15  YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 62


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 72  RNSDYSHSQVHDQQIVGAQADGLRCFTS 155
           R  DY +  + DQ +V    +G+R  +S
Sbjct: 178 RCKDYKNEDLEDQPVVYNDVNGVRINSS 205


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 103 MTNRLLARKQMVCDVLHPGKPTV 171
           +TN+     Q++ + LH  KPTV
Sbjct: 134 LTNKSNGNGQIMLNSLHKYKPTV 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,540
Number of Sequences: 336
Number of extensions: 2645
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11839801
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)