Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30247
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 87 1e-18
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 84 1e-17
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.91
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 26 3.7
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa... 25 4.8
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 25 6.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 8.4
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 8.4
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 8.4
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 8.4
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 8.4
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 87.4 bits (207), Expect = 1e-18
Identities = 43/64 (67%), Positives = 49/64 (76%)
Frame = +1
Query: 64 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 243
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 244 FKTN 255
+T+
Sbjct: 60 LRTH 63
Score = 74.5 bits (175), Expect = 8e-15
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = +3
Query: 219 SRCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKER 395
S C + FGGG+STGFALIYD+ + KKFEP +RL R G E ++ R+QRK+R
Sbjct: 52 SECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQR 111
Query: 396 KNRMKKVRGT 425
KNR KKV GT
Sbjct: 112 KNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 84.2 bits (199), Expect = 1e-17
Identities = 40/64 (62%), Positives = 47/64 (73%)
Frame = +1
Query: 64 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 243
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 244 FKTN 255
+T+
Sbjct: 60 LRTH 63
Score = 70.1 bits (164), Expect = 2e-13
Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 FGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 425
+GGG++TGFALIYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 64 YGGGRTTGFALIYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.91
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 315 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 413
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 96 ASANSRCSFTHFELFSII 43
+S SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.8 bits (54), Expect = 3.7
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 306 DRVCRRSKRIQLTCHLRICLETEY 235
D VC+R ++QL C + L+ E+
Sbjct: 197 DVVCQREAKVQLQCFNEVLLQAEH 220
>SPBC25B2.04c |||mitochondrial ribosome assembly
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 4.8
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 1/91 (1%)
Frame = -2
Query: 335 PVLGLELLGQIECVVDQSESS*LATSEFVLKPNTNTTSGVTLYILASFSRISVLLTVGFP 156
P ELL I +VDQ+ ++ FV PNT +S + + + + +P
Sbjct: 123 PYFAKELLRLIRTLVDQASANGRVYVYFVGMPNTGKSSILNSLRNVALRKSKSAIVGNYP 182
Query: 155 G-CKTSQTICLRANNLLVMNLRVRIVAVPSL 66
G K I N++ V L + PS+
Sbjct: 183 GVTKRISEIVRLFNDMDVYMLDTPGIMTPSI 213
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 181 EIREKLAKMYKVTPDVVFVFGFKTN 255
+++E LAK YK+ P +F F T+
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTS 310
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 309 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 413
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +3
Query: 315 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 416
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 191 SRISVLLTVGFPGCKTSQTICLRANNL 111
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 357 EKKRPTRKQRKERKNRMKKVRGT 425
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 8.4
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 72 RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 188
+NS++S + +Q + ADG R + + Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,099
Number of Sequences: 5004
Number of extensions: 42915
Number of successful extensions: 121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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