Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30247
(501 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 93 9e-20
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 92 2e-19
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 79 1e-15
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 33 0.17
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 30 1.2
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.8
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.8
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.4
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 93.5 bits (222), Expect = 9e-20
Identities = 43/68 (63%), Positives = 50/68 (73%)
Frame = +3
Query: 219 SRCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 398
S C +F+ FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 399 NRMKKVRG 422
NR KK+RG
Sbjct: 118 NRAKKIRG 125
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/59 (61%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTN 255
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTH 69
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 92.3 bits (219), Expect = 2e-19
Identities = 42/68 (61%), Positives = 50/68 (73%)
Frame = +3
Query: 219 SRCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 398
+ C +F+ FGGGKSTGF LIYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 ANCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 399 NRMKKVRG 422
NR KK+RG
Sbjct: 118 NRAKKIRG 125
Score = 83.0 bits (196), Expect = 1e-16
Identities = 37/59 (62%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTN 255
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTH 69
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 79.4 bits (187), Expect = 1e-15
Identities = 36/59 (61%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTN 255
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTH 69
Score = 61.7 bits (143), Expect(2) = 6e-15
Identities = 27/42 (64%), Positives = 31/42 (73%)
Frame = +3
Query: 219 SRCSVRIRFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLAR 344
S C +F+ FGGGKSTGF LIYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
Score = 35.9 bits (79), Expect(2) = 6e-15
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 345 HGLYEKKRPTRKQRKERKNRMKKVRG 422
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 142 DVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNSEVASQLD 279
D+L + KT +R L Y + PD +FV K S+V Q+D
Sbjct: 724 DILSIARSVCCKTSLRAALKAKYGILPDNIFVKAAKLCSDVGIQID 769
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 275 WIRFDLRHTRSGQEVRAQAQVSPPRPVREEEAHA 376
W R +R + G E AQ+ PPRPV + +HA
Sbjct: 155 WSRL-VRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -2
Query: 242 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 63
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 191 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 63
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 348 GLYEKKRPTRKQRKERKNRMKK 413
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,067,806
Number of Sequences: 37544
Number of extensions: 293350
Number of successful extensions: 853
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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