Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30247
(501 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_45510| Best HMM Match : DUF1279 (HMM E-Value=1.2) 29 2.2
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4) 29 2.2
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37) 29 2.2
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13) 29 2.2
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 28 5.0
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0) 28 5.0
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 27 6.6
SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083) 27 8.7
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 27 8.7
>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -1
Query: 228 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 82
+I N +F + DLG+A + + + +H L R Q+VGH A S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336
>SB_45510| Best HMM Match : DUF1279 (HMM E-Value=1.2)
Length = 148
Score = 29.1 bits (62), Expect = 2.2
Identities = 19/75 (25%), Positives = 33/75 (44%)
Frame = +1
Query: 82 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNSE 261
T RTR +LA K D H G S+ ++E++ ++K V G +
Sbjct: 7 TRRTRSRTDAAILAVKSFRLDPSHTGSVAKSEKPLKERIKAIFKKYGFTVTAIGLAVATT 66
Query: 262 VASQLDSL*STTHSI 306
+A+ + SL + S+
Sbjct: 67 IAAIVTSLGKSLSSV 81
>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
Length = 166
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 327 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 419
+H LA H +++RP+ R+ K R++K+R
Sbjct: 79 RHGLASHDKKKRERPSLVARERMKKRLRKIR 109
>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
Length = 1376
Score = 29.1 bits (62), Expect = 2.2
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = +3
Query: 300 LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 416
LDL KHR RH EKK K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037
>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
Length = 417
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +3
Query: 327 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 419
+H LA H +++RP+ R+ K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408
>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
Length = 1468
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -2
Query: 254 FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 135
F+ PN ++ TL ++ S R+ V+ +VG PGC S T
Sbjct: 904 FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946
>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
Length = 1074
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 204 FGELLTDLGLADGWFSWM*NIANHLLA 124
FGEL+ D G + F+W+ N++N +LA
Sbjct: 76 FGELMLDAGWSRNAFNWL-NMSNSMLA 101
>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 324 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 413
P+ L H L ++ R R+QR ER++R+K+
Sbjct: 21 PQQILFTHRLEQRYRVERRQRLERRHRVKR 50
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = -2
Query: 251 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 102
V+ NT ++ +T +F I +++T C++S TI + NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186
>SB_43942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 973
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -2
Query: 149 KTSQTICLRANNLLVMN-LRVRIVAVPSLILNYFQ*FGVYTH 27
K S + LR +NL + + RIV P ++Y + FG+Y H
Sbjct: 245 KRSPKMILRLHNLCWRHAMSCRIVPTPPKAISYRKLFGIYFH 286
>SB_36320| Best HMM Match : LUC7 (HMM E-Value=0.083)
Length = 216
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = +3
Query: 240 RFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 404
R D FGG GF I + L + + R R +K+R R++ +E++ R
Sbjct: 69 RLADHFGGKLHMGFIKIRNRLQELNEEIARKREERELERQKRREEREREREQERR 123
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 315 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 419
KFEPKH+ + KKR +RK+ E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,237,211
Number of Sequences: 59808
Number of extensions: 332193
Number of successful extensions: 947
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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