Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30247
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...    96   1e-20
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    40   0.001
AL033514-39|CAA22095.2|  401|Caenorhabditis elegans Hypothetical...    29   2.5  
AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical...    28   3.3  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    28   3.3  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   4.4  
Z83111-2|CAB05533.2|  331|Caenorhabditis elegans Hypothetical pr...    27   5.8  
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   7.6  
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p...    27   7.6  
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   7.6  
U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoy...    27   7.6  
U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoy...    27   7.6  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 45/62 (72%), Positives = 51/62 (82%), Gaps = 1/62 (1%)
 Frame = +3

Query: 243 FQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 419
           F+ K GGGKS GFAL+YDT+D AKKFEPK+RL R GL  K ++P RKQRKERKNR KKVR
Sbjct: 60  FESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVR 119

Query: 420 GT 425
           GT
Sbjct: 120 GT 121



 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 38/57 (66%), Positives = 48/57 (84%)
 Frame = +1

Query: 82  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT 252
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFES 62


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 133 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 231
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 276 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 404
           GF L+YDT D A K++P+H  + H      R +  +RKE++ R
Sbjct: 54  GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>AL033514-39|CAA22095.2|  401|Caenorhabditis elegans Hypothetical
           protein Y75B8A.5 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 260 SEFVLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLR 93
           S+F + P+T +T   T ++L   S++  +    F G  T Q I L A  L  ++ R
Sbjct: 221 SQFDIPPSTFSTLSHTSHLLIEHSKVPSIAPDAFSGLTTIQVIELHACQLGTISAR 276


>AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical
           protein Y105E8A.28 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 296 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 418
           H R+ +  R +  V PP+   E E  A  A    EQN  GP
Sbjct: 26  HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 288 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 413
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 17  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 288 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 413
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 64  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 194 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 54
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>Z83111-2|CAB05533.2|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.3 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = -2

Query: 485 IHLYLAFTSLLGGRTYFRFLGTADL-LHSV---LTFFTLFARGPLLLVQAVAG*PVLGLE 318
           +HL+ A+  +       + + T+ L LH V   + FFT F   P+L++   AG P+  L 
Sbjct: 29  VHLFGAYIIIFKTPDKMKSVRTSMLSLHLVGAFVDFFTSFLTAPVLILPVCAGYPLGVLG 88

Query: 317 LLG 309
           +LG
Sbjct: 89  MLG 91


>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357 EKKRPTRKQRKERKNRMKKVR 419
           E+KR  +K+R ERK   +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840


>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
            F07A11.6c protein.
          Length = 2392

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357  EKKRPTRKQRKERKNRMKKVR 419
            E+KR  +K+R ERK   +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131


>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
            F07A11.6b protein.
          Length = 2407

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357  EKKRPTRKQRKERKNRMKKVR 419
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357  EKKRPTRKQRKERKNRMKKVR 419
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357 EKKRPTRKQRKERKNRMKKVR 419
           E+KR  +K+R ERK   +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840


>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
            protein F07A11.6c protein.
          Length = 2392

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357  EKKRPTRKQRKERKNRMKKVR 419
            E+KR  +K+R ERK   +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131


>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
            protein F07A11.6b protein.
          Length = 2407

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357  EKKRPTRKQRKERKNRMKKVR 419
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 357  EKKRPTRKQRKERKNRMKKVR 419
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -2

Query: 149 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 54
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>U50307-2|AAA92303.1|  558|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform a protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 139 CDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNS 258
           C  +H    +VS+ ++ + +A+   V   + F  GF TNS
Sbjct: 209 CTTVHERGRSVSQAKLEKLVAEFLGVEDAICFSMGFATNS 248


>U50307-1|AAK71365.1|  586|Caenorhabditis elegans Serine palmitoyl
           transferase familyprotein 2, isoform b protein.
          Length = 586

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 139 CDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNS 258
           C  +H    +VS+ ++ + +A+   V   + F  GF TNS
Sbjct: 237 CTTVHERGRSVSQAKLEKLVAEFLGVEDAICFSMGFATNS 276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,884,024
Number of Sequences: 27780
Number of extensions: 246449
Number of successful extensions: 839
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)