Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30247
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   5.5  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   5.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.5  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 110 LVMNLRVRIVAVPSLILNYFQ*FGVYTHVSLLKQE 6
           LVM+ +++I+ +   IL+    + +   +S+ KQE
Sbjct: 43  LVMDTKLKIIEILQFILDVRLDYRISCLLSIFKQE 77


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = -2

Query: 110 LVMNLRVRIVAVPSLILNYFQ*FGVYTHVSLLKQE 6
           LVM+ +++I+ +   IL+    + +   +S+ KQE
Sbjct: 11  LVMDTKLKIIEILQFILDVRLDYRISCLLSIFKQE 45


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 145 VLHPGKPTVSKTEIREK 195
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 145 VLHPGKPTVSKTEIREK 195
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 57  IQNE*RNSDYSHS 95
           I++E  NSDYSH+
Sbjct: 224 IKHESDNSDYSHT 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,061
Number of Sequences: 438
Number of extensions: 3067
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)