Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30247
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...    90   7e-19
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...    87   5e-18
At5g26850.1 68418.m03203 expressed protein                             29   1.8  
At3g19680.1 68416.m02493 expressed protein                             28   4.1  
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin...    27   5.4  
At5g49670.1 68418.m06150 hypothetical protein                          27   9.4  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score = 90.2 bits (214), Expect = 7e-19
 Identities = 42/65 (64%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
 Frame = +1

Query: 64  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 240
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 241 GFKTN 255
            F+T+
Sbjct: 61  KFRTH 65



 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 40/61 (65%), Positives = 49/61 (80%)
 Frame = +3

Query: 240 RFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 419
           +F+  FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 420 G 422
           G
Sbjct: 121 G 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 41/65 (63%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
 Frame = +1

Query: 64  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 240
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 241 GFKTN 255
            F+T+
Sbjct: 61  KFRTH 65



 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 39/61 (63%), Positives = 49/61 (80%)
 Frame = +3

Query: 240 RFQDKFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 419
           +F+  FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 420 G 422
           G
Sbjct: 121 G 121


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +1

Query: 103 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTNSE 261
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N E
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPNIE 755


>At3g19680.1 68416.m02493 expressed protein
          Length = 491

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +1

Query: 154 PGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNSEVASQL 276
           P K T SKT    +L    +V PD  FVF F    E + Q+
Sbjct: 163 PSKKTKSKTGSDPELHVSVRVEPDPRFVFQFDGEPECSPQV 203


>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
           protein   contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 370

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 272 NWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRYQE 430
           N   F++++  S   V A+ +V PP PVR     +A    +   Q  E P Y++
Sbjct: 202 NGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTYKQ 255


>At5g49670.1 68418.m06150 hypothetical protein 
          Length = 1184

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +3

Query: 192 EARQNVQGYSRCSVR-IRFQDKFGGGKSTGFALIYDTLDLAKKFEPK-H-RLARHGLYEK 362
           E    V   + C ++  +F  + GGGK      ++   ++A ++EP  H  +   GL  K
Sbjct: 715 EEPHQVSRVTLCDIQNAKFVRRIGGGKEVSICSLFSASNIAVRWEPDVHISMVELGLRLK 774

Query: 363 KRPTRKQRKERKNR 404
                ++ K+  NR
Sbjct: 775 SLVLTQKLKQHGNR 788


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,156,138
Number of Sequences: 28952
Number of extensions: 228989
Number of successful extensions: 636
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)