Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30246
         (783 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    22   4.8  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.8  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    22   6.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   6.4  

>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 414 SLGRKDHNAQVEILLNISHGVQLGSVESHLTLF 512
           +L R D  AQ+++ +    G +LG + + +  F
Sbjct: 101 TLQRSDEEAQIQLWIKQIRGAELGGLGTLIAPF 133


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 519 LNRITSDATRPNLTGHHAK 463
           +N ++SD+T  +  GHH K
Sbjct: 123 VNHLSSDSTTIHWHGHHQK 141


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +3

Query: 414 SLGRKDHNAQVEILLNISHGVQLGSV 491
           +L R D  AQ+++ +    G +LG +
Sbjct: 101 TLQRSDEEAQIQLWIKQIRGAELGGL 126


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 461 YFAWCPVRFGRVA 499
           +  +CP++FGR A
Sbjct: 423 FHCYCPIKFGRKA 435


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,821
Number of Sequences: 336
Number of extensions: 4175
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)