Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30246
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    30   0.33 
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    26   5.3  
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    25   9.3  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   9.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   9.3  

>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 219 TLNYF--FYNKELHLIQCTTTPHIFFYLKVVQRTQTQ*VHSIYISKPL*KRGNLPLLYH 389
           T++YF  ++  +  + +CTTT  IF YLK +  +  +     YI KPL    ++ L  H
Sbjct: 215 TVDYFSIYWISKCEISKCTTTEDIFSYLKNLIPSAEKSPAYNYILKPLRATAHVVLFRH 273


>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 254 SYPVYHDTTHLFLFKSGSKNTNTMSSFDLY 343
           SYP+ H    L  +K+GS+N  ++    LY
Sbjct: 247 SYPILHGPRFLLSYKNGSRNVPSILLAALY 276


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -1

Query: 429 PYVQAMCSVEYFKYGRVVEDFRAFKEVLKYKSNELIVFVFFEPLL--NKKRCVVSWYTG* 256
           P   A C  E F+  +V    + + +V   K +E++  V+  PL+    + C VS     
Sbjct: 143 PRATAYCVCEAFQLPKVKHFLKHYHKVRAKKYDEVLYAVYHLPLVYGRSESCRVSSGPAP 202

Query: 255 DEVPYYKKNN 226
           D++P    N+
Sbjct: 203 DDMPSSASNH 212


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 9/44 (20%), Positives = 27/44 (61%)
 Frame = -1

Query: 627 ISMEHVSAALARRQPRNEFKLKLYLAASCLSTFMGELNRITSDA 496
           ++M+ +S  +++ +  N+  +KL+L+       + + ++IT+D+
Sbjct: 215 VNMDKISQIISKNRSLNDTTVKLFLSGGQTELKLYDCSKITADS 258


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 685 NPQKKNLIRNPQSNLIIKLNKYGTRECGPCTPSAPK 578
           N  K  LI+NP + L +  +K  + E    T +APK
Sbjct: 333 NITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPK 368


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 79  QSVRLRNTLTLMQK-TVNEVYHNKFTRYRM 165
           Q  RL + L + +K T++E+ H+KF  Y M
Sbjct: 728 QEQRLLSFLRVYEKNTLSEIAHHKFNEYEM 757


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,338,897
Number of Sequences: 5004
Number of extensions: 69646
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)