Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30246
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)                      31   1.1  
SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)                      29   4.2  
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)                     29   5.6  
SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)            28   7.4  
SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)                       28   7.4  

>SB_4186| Best HMM Match : ADK (HMM E-Value=0.094)
          Length = 1053

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 523 AHERRQATGGQIKFQLKFVSGLTACKGRTHVFHTYLI 633
           +H R++A      F LK +SGL   KG+THV  + L+
Sbjct: 271 SHLRKEAELNDTPFGLKVMSGLRKPKGKTHVKRSALV 307


>SB_51311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 156 LPNDRGLLRNLQFYFLYTSNRTLNYFFYNKELHLIQCT-TTPHIFFY 293
           +P+    L  + F++ +TSNRT +Y F +   H    T T+ HIF Y
Sbjct: 94  IPSTTPSLVIITFHYAFTSNRTFHYAFTSN--HTFHYTVTSNHIFHY 138


>SB_43872| Best HMM Match : DUF229 (HMM E-Value=0)
          Length = 806

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 254 SYPVYHDTTHLFLFKSGSKNTNTMSSFDLYFKTSLKARK 370
           +YP      + FL   G +  NT+S+ DL F T LK  K
Sbjct: 365 AYPGRRKFGYTFLCDIGHRRVNTLSAADLEFLTFLKTAK 403


>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
          Length = 823

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 312 FFEPLLNKKRCVVSWYTG*DEVPYYKKNNLKFYSRYKENKTGGFATTHGH-SVTCELI 142
           FFE L+ K   V+ W T   ++ YY+  N+  +    +N T        H ++ C+ +
Sbjct: 730 FFEILICKSH-VIGWMTSSLKIKYYQTANIAEFDVLTKNVTSSSTIMEAHPAIVCDRV 786


>SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +3

Query: 183 NLQFYFLYTSNRTLNYF--FYNKELHLIQCTTTP 278
           N+  Y+  TS  T  Y   +Y    HL+Q T+TP
Sbjct: 118 NIDTYYRATSTPTTGYIDTYYRVHRHLLQATSTP 151


>SB_35197| Best HMM Match : SAP (HMM E-Value=3.2)
          Length = 323

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 461 YFAWCPVRFGRVASDVI 511
           +F W PV FG ++SDV+
Sbjct: 286 HFRWIPVEFGSISSDVV 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,216,834
Number of Sequences: 59808
Number of extensions: 486201
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)