Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30246
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068708-8|AAC17761.1|  327|Caenorhabditis elegans Hypothetical ...    31   0.93 
Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U41559-10|AAC24264.2|  371|Caenorhabditis elegans Hypothetical p...    30   1.6  
U64840-5|AAB04963.2|  346|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U53141-6|AAA96108.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine re...    28   8.7  

>AF068708-8|AAC17761.1|  327|Caenorhabditis elegans Hypothetical
           protein C18G1.9 protein.
          Length = 327

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 207 YKENKTGGFATTHGHSVTCELIVVHFIHGFLHKS*CIAQTNAL 79
           Y ++K GG  T    S  C +I V   H FL K+ CI  T+ L
Sbjct: 57  YSQSKYGGRKTP---SSACTIITVQIAHDFLSKNVCIPPTHPL 96


>Z68014-5|CAA92027.1|  353|Caenorhabditis elegans Hypothetical
           protein W04G3.5 protein.
          Length = 353

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +2

Query: 281 HLFLFKSGSKNTN--TMSSFDLYFKTSLKARKSSTT-LPYLKYSTE 409
           H+F+ +SGSKN N   M    L +       K+ T  +PYL YS +
Sbjct: 59  HVFILQSGSKNVNNDVMELLVLIYACKTSMSKTITVIMPYLPYSKQ 104


>U41559-10|AAC24264.2|  371|Caenorhabditis elegans Hypothetical
           protein C26B2.4 protein.
          Length = 371

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 559 LFGRQLLVDVHGRVKSNNVRCDSTEPNWTPCEILSNISTCALWS 428
           L  R L   VH  ++  + +C   + +W P E+L+  + C  WS
Sbjct: 148 LIDRMLSSTVHELIQKTSPQCPRFKRDWKPLEMLNLENFCRSWS 191


>U64840-5|AAB04963.2|  346|Caenorhabditis elegans Hypothetical
           protein ZC317.6 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 207 YKENKTGGFATTHGHSVTCELIVVHFIHGFLHKS*CIAQTNAL 79
           Y ++K GG  T    S  C +I V   H FL  + CI  T+ L
Sbjct: 57  YSQSKYGGRKTP---SSACTIITVQIAHDFLSNNVCIPPTHLL 96


>U53141-6|AAA96108.1|  346|Caenorhabditis elegans Hypothetical
           protein C14C11.1 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 207 YKENKTGGFATTHGHSVTCELIVVHFIHGFLHKS*CIAQTNAL 79
           Y ++K GG  T    S  C +I V   H FL  + CI  T+ L
Sbjct: 57  YSQSKYGGRKTP---SSACTIITVQIAHDFLSNNVCIPPTHLL 96


>AL021566-2|CAA16502.1|  283|Caenorhabditis elegans Hypothetical
           protein F08E10.2 protein.
          Length = 283

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 255 LIQCTTTPHIFFYLKVVQRTQTQ*VHSIYISKPL*KRGNLPLLY 386
           LI+  T    F + + V       +HSI++SK L K+ +L L+Y
Sbjct: 3   LIKTATVSFSFLFTQAVFYLNFYLLHSIFVSKKLAKKPDLVLIY 46


>AF038608-2|AAU05595.1|  297|Caenorhabditis elegans Serpentine
           receptor, class z protein70 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +3

Query: 177 LRNLQFYFLYTSNRTLNYFFYNKELHLIQCTTTPHIFFYLKVVQRTQTQ*VHSIYI 344
           LRN+ FY L+  ++T     ++  L    CT  P +  Y    + +    + ++YI
Sbjct: 90  LRNIIFYSLFIIDQTFELLLFSIALEKCLCTFFPKLEPYFTSARNSLLDKIWALYI 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,332,835
Number of Sequences: 27780
Number of extensions: 383848
Number of successful extensions: 961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)