Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30246
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   4.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   5.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   7.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 461 YFAWCPVRFGRVA 499
           +  +CPVRFGR A
Sbjct: 427 FHCYCPVRFGRKA 439


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 332 FDLYFKTSLKARKSSTTLPYL 394
           FD++FKT+L A+ +     Y+
Sbjct: 121 FDIFFKTALWAKNNINEAQYI 141


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 332 FDLYFKTSLKARKSSTTLPYL 394
           FD++FKT+L A+ +     Y+
Sbjct: 121 FDIFFKTALWAKNNINEAQYI 141


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 174 THGHSVTCELIVVHFIHGFLHKS 106
           T+ +   C+L +VH+  GF+ +S
Sbjct: 500 TYTYDTICQLNIVHYGIGFITQS 522


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = -1

Query: 438 HYGPYVQAMCSVEYFKYGRVVED 370
           HY P     C+VE   YG  V D
Sbjct: 166 HYYPLDSQNCTVEIESYGYTVLD 188


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 516  LTRP*TSTSNWRPNKVS 566
            +TRP T + NW P  ++
Sbjct: 1144 MTRPDTDSENWTPKMMA 1160


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 441 AHYGPYVQAMCSVEYFKYGRVVEDFRAFKEVLKYKSNE 328
           A+ GPY+Q M +      G   +D+R   EV++   +E
Sbjct: 758 ANIGPYIQKMIAAAAPFKGMETQDYR-IPEVMRRLMSE 794


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/36 (25%), Positives = 21/36 (58%)
 Frame = -2

Query: 491 DRT*LDTMRNIKQYFNLRIMVLTSKRCVLLNILSMV 384
           D+T     +++ +Y NL+ MV++  +   +NI  ++
Sbjct: 211 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVI 246


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 506 RQMRLDRT*LDTMRNIKQYFNLRIMVLTSKRCVLL 402
           R+M++DRT L  +R+I   FN  +  L S + V L
Sbjct: 324 REMKMDRTELGCLRSI-ILFNPEVRGLKSIQEVTL 357


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 506 RQMRLDRT*LDTMRNIKQYFNLRIMVLTSKRCVLL 402
           R+M++DRT L  +R+I   FN  +  L S + V L
Sbjct: 324 REMKMDRTELGCLRSI-ILFNPEVRGLKSIQEVTL 357


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 649 SNLIIKLNKYGTRECGPCTPSAPK 578
           S+ +  +   G +   PCTPS P+
Sbjct: 377 SSYVNSMYASGAQFATPCTPSPPR 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,524
Number of Sequences: 438
Number of extensions: 4954
Number of successful extensions: 30
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)