Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30246
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g17611.1 68416.m02249 rhomboid family protein / zinc finger p...    32   0.37 
At4g38200.1 68417.m05392 guanine nucleotide exchange family prot...    29   2.6  
At3g29760.1 68416.m03758 NLI interacting factor (NIF) family pro...    29   3.5  
At3g13784.1 68416.m01741 beta-fructosidase, putative / beta-fruc...    29   3.5  
At3g17611.2 68416.m02250 rhomboid family protein / zinc finger p...    29   4.6  

>At3g17611.1 68416.m02249 rhomboid family protein / zinc finger
           protein-related contains Pfam profiles PF01694: Rhomboid
           family, PF00641: Zn-finger in Ran binding protein and
           others
          Length = 334

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 25/91 (27%), Positives = 44/91 (48%)
 Frame = +3

Query: 252 HLIQCTTTPHIFFYLKVVQRTQTQ*VHSIYISKPL*KRGNLPLLYHT*NIQQNTSLGRKD 431
           H+ +    PH+ F  K ++R      +  ++++P      + LL+    I+  TS+G  +
Sbjct: 59  HISEVWFNPHLIFKHKDLKRLFLSAFY--HVNEPHLVYNMMSLLWK--GIKLETSMGSSE 114

Query: 432 HNAQVEILLNISHGVQLGSVESHLTLFDLTR 524
             + V  L+ +S GV L   +S L LFD  R
Sbjct: 115 FASMVFTLIGMSQGVTLLLAKSLLLLFDYDR 145


>At4g38200.1 68417.m05392 guanine nucleotide exchange family protein
            similar to Brefeldin A-inhibited guanine
            nucleotide-exchange protein 2 [Homo sapiens] SP|Q9Y6D5;
            contains Pfam profile PF01369: Sec7 domain
          Length = 1698

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = -3

Query: 685  NPQKKNLIRNPQSNLIIKLNKYGTRECGPCTPSAPKRI*AETLFGRQLLVDVHGRVKSNN 506
            N +KK  ++NP    +++   Y +   GP  P   K+           L+D  G  + NN
Sbjct: 944  NLKKKGALQNPVMMAVVRGGSYDSSTIGPNMPGLVKQDQINNFIANLNLLDQIGSFQLNN 1003

Query: 505  VRCDS 491
            V   S
Sbjct: 1004 VYAHS 1008


>At3g29760.1 68416.m03758 NLI interacting factor (NIF) family
           protein contains Pfam profile PF03031: NLI interacting
           factor
          Length = 465

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 408 SVEYFKYGRVVEDFRAFKEVLKYKSNELIVFVFFEPL-LNKKRCVVSWYTG*DEVPYYKK 232
           ++E  K G V+    +  EV   K+N+  V    E +  N++ CV+   T  DEVP  K 
Sbjct: 157 TIEKNKEGSVISAVTSNDEVPVVKNNDSCVVSGDETVEKNEEGCVILAVTSSDEVPVVKN 216

Query: 231 NN 226
           N+
Sbjct: 217 ND 218



 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 408 SVEYFKYGRVVEDFRAFKEVLKYKSNELIVFVFFEPL-LNKKRCVVSWYTG*DEVPYYKK 232
           +VE  + G V+    +  EV   K+N+  V    E +  N++ CV+   T  DEVP  K 
Sbjct: 87  NVEKKEEGSVISAVTSSDEVPVVKNNDSCVVSGDETVEKNEEGCVILAVTSSDEVPVVKN 146

Query: 231 NN 226
           N+
Sbjct: 147 ND 148


>At3g13784.1 68416.m01741 beta-fructosidase, putative /
           beta-fructofuranosidase, putative / cell wall invertase,
           putative similar to beta-fructofuranosidase GI:402740
           from [Arabidopsis thaliana]
          Length = 569

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 272 DTTHLFLFKSGSKNTNTMSSFDLYFKTSL 358
           + THLF F  GS+N N +S      K+SL
Sbjct: 541 ERTHLFAFNKGSQNVNVLSLSAWSMKSSL 569


>At3g17611.2 68416.m02250 rhomboid family protein / zinc finger
           protein-related contains Pfam profiles PF01694: Rhomboid
           family, PF00641: Zn-finger in Ran binding protein and
           others
          Length = 239

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 399 IQQNTSLGRKDHNAQVEILLNISHGVQLGSVESHLTLFDLTR 524
           I+  TS+G  +  + V  L+ +S GV L   +S L LFD  R
Sbjct: 9   IKLETSMGSSEFASMVFTLIGMSQGVTLLLAKSLLLLFDYDR 50


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,930,447
Number of Sequences: 28952
Number of extensions: 341055
Number of successful extensions: 759
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)