Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30245
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    92   8e-20
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    29   0.68 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   2.1  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   2.7  
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    27   2.7  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    26   6.3  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    25   8.3  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 41/90 (45%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +1

Query: 244 FQACYSNED-EAKSIPYFWEKFDPENYSIWYAEYKYPEELAK-VFMSCNLITGMFQRLDK 417
           ++  YSN+D  + ++P+F+E FDPENYS+W  +Y YPE+L + VFM+ NLI G FQRL+ 
Sbjct: 268 YKRVYSNQDTRSGALPWFFEHFDPENYSVWKVDYSYPEDLKQPVFMTNNLIGGFFQRLEA 327

Query: 418 MRKQAFASVCLFGEDNNSTISGVWVWRGKE 507
            RK  F    + GE+ ++TI+G +V +G +
Sbjct: 328 SRKYIFGCCVVIGENGDNTITGAFVIKGHD 357


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 293 SGRSLTPRTIPFGMPNTNTLRNSLRCS*AVTLLRVCSRG*TKCANRLSHPSAC 451
           SGR +  R + +  PN   L+   R    VTL  VC RG +  +NR+     C
Sbjct: 163 SGRKIQ-RPVAYN-PNATALKRKSRKVDMVTLCSVCQRGHSPLSNRIVFCDGC 213


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +3

Query: 534 QVDYESYDWKKLD 572
           QVDY SYDWK+ D
Sbjct: 298 QVDYLSYDWKETD 310


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = -3

Query: 611 VVLDKFLGLLARRIQFLPVVGLVVHLPIRRQREHGS---FPRHTHTPEMV 471
           VV++  L  +  RI F+P V +V ++P      +GS   F +  H   MV
Sbjct: 169 VVIETLLKYILSRISFIPRVSVVPYIPDAAYGIYGSPSTFTQFNHMSSMV 218


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -3

Query: 494 HTHTPEMVELLSS---PNRQTDAKACLRILSNLWNIPVIRL 381
           + H P  V+ L+    PN   +   CL IL   WN PV+ L
Sbjct: 80  YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWN-PVLNL 119


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 209 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYL 102
           RRGPWTP   ++     + +L   +++ L +H   L
Sbjct: 324 RRGPWTPKLVESSGGYEEHELKEIAYIMLHYHNKPL 359


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 632 SVPFHEEVVLDKFLGLLARRIQFLPVVGLVVHLPIRRQREHGSFPRHTH 486
           S+ F     + KF+ L    I F P+  L   LPI R + H    +H H
Sbjct: 373 SIKFKNGNGVSKFMFLFTFGIVFPPLWILASFLPIPRTKIHQMRVKHVH 421


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 664 LAPG*TFYRLCRFRSTKK*SWTSFLVSSLEG 572
           L+PG  FY++   R+T   SW S L     G
Sbjct: 289 LSPGCPFYKIWHIRNTSCQSWPSPLYVKFNG 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,547
Number of Sequences: 5004
Number of extensions: 61577
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)