Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30245
(727 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 76 3e-14
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 62 4e-10
06_03_0052 - 16027570-16027617,16027789-16027795,16028103-160283... 30 1.6
07_03_0897 - 22389116-22389600,22389611-22389728 30 2.2
01_07_0113 + 41158666-41159615,41159695-41160076 29 2.8
01_01_0041 - 308822-309070,309256-309367,309455-309552,309632-30... 29 2.8
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 29 3.8
08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766 29 5.0
03_03_0142 + 14800317-14801240 29 5.0
06_02_0186 + 12787866-12788055,12788575-12788642,12788864-127890... 28 6.6
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 28 6.6
12_02_0078 + 13290432-13290924,13290998-13291201,13291290-132920... 28 8.7
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 28 8.7
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 28 8.7
07_01_0481 - 3621798-3621926,3622572-3622660,3622780-3622933,362... 28 8.7
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 28 8.7
01_06_1224 - 35508842-35510404 28 8.7
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 75.8 bits (178), Expect = 3e-14
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +1
Query: 280 SIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGE 459
+I FW+ +DPE YS+W+ +YKY +E F++ N + G QR+D RK AF + + G
Sbjct: 295 AIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGS 354
Query: 460 DNNSTISGVWVWRGKE 507
+ + G+W++RG E
Sbjct: 355 EPPFKVKGLWLFRGPE 370
Score = 75.8 bits (178), Expect = 3e-14
Identities = 29/76 (38%), Positives = 47/76 (61%)
Frame = +1
Query: 280 SIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGE 459
+I FW+ +DPE YS+W+ +YKY +E F++ N + G QR+D RK AF + + G
Sbjct: 860 AIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGS 919
Query: 460 DNNSTISGVWVWRGKE 507
+ + G+W++RG E
Sbjct: 920 EPPFKVKGLWLFRGPE 935
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 62.1 bits (144), Expect = 4e-10
Identities = 26/76 (34%), Positives = 45/76 (59%)
Frame = +1
Query: 280 SIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGE 459
+I FW+ +DPE YS+W+ +YKY +E F++ N +R+D RK AF + + G
Sbjct: 312 AIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTMN------KRMDLCRKYAFGKMLVIGS 365
Query: 460 DNNSTISGVWVWRGKE 507
+ G+W++RG++
Sbjct: 366 TPPFKVKGLWLFRGQD 381
>06_03_0052 -
16027570-16027617,16027789-16027795,16028103-16028341,
16028432-16028566,16028670-16028888
Length = 215
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 428 RLSHPSACLVKTTIPPSPECGCGAERS 508
R HP++ LV+ T PP P G G S
Sbjct: 30 RAGHPTSALVRATAPPPPATGGGGSSS 56
>07_03_0897 - 22389116-22389600,22389611-22389728
Length = 200
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = -3
Query: 299 SQK*GIDLASSSLE*HA*NHPC*RYL*ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALS 120
S + + L SSS A PC Y +S+ +G P +PP + P ++ VAL
Sbjct: 68 SSRTAVSLLSSSSSPFAHQQPCRPYWSSSAAQG-LLPLLRASPP-----RFPAATVVALG 121
Query: 119 FHTSYLFCPPSCSVHQLTPGT 57
+ +SYL+ +V + P T
Sbjct: 122 WWSSYLYIATDVAVQAIGPAT 142
>01_07_0113 + 41158666-41159615,41159695-41160076
Length = 443
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 475 ISGVWVWRGKEPCSRCRLIGRWTTSPTTG 561
+ G W W G+EP SRC +P TG
Sbjct: 100 VDGGWFWAGREPGSRCACTAH-PFNPVTG 127
>01_01_0041 -
308822-309070,309256-309367,309455-309552,309632-309739,
309880-309918,310002-310073,310163-310426,311867-312064
Length = 379
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 229 LQHG*FQACYSNEDEAKSIPYFWEKFDPENYSIWYAEY 342
L+ G C++NEDEA+ + FDPE + A+Y
Sbjct: 240 LETGNIDLCFANEDEARELLGGELTFDPEEALAFLAKY 277
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 434 SHPSACLVKTTIPPSPECGC 493
SH C+ K PP P CGC
Sbjct: 206 SHAFVCVCKPAPPPPPPCGC 225
>08_02_0792 + 21233578-21233710,21233807-21233936,21234097-21234766
Length = 310
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = -3
Query: 218 ASSRRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 60
A ++GPWTP QE P +W A+ +T + C SC + + L PG
Sbjct: 10 AEVKKGPWTPEEDLMLVAYVQEH-GPGNWRAVPTNTGLMRCSKSCRLRWTNYLRPG 64
>03_03_0142 + 14800317-14801240
Length = 307
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -3
Query: 209 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 60
++GPWTP QE P +W A+ T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDMVLASYVQEH-GPGNWRAVPPRTGLLRCSKSCRLRWTNYLRPG 64
>06_02_0186 +
12787866-12788055,12788575-12788642,12788864-12789007,
12789112-12789268,12789344-12789366,12789487-12789495,
12789694-12790108,12790449-12790652,12790741-12791201,
12791206-12791476,12791560-12791951
Length = 777
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 487 WVWRGKEPCSRCRLIGRW-TTSPTTGRNW 570
WV+ +EP +L +W TTS TG++W
Sbjct: 719 WVYEWQEPQWYAQLYAQWQTTSSWTGQSW 747
>01_01_1009 +
7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +1
Query: 487 WVWRGKEPCSRCRLIGRW-TTSPTTGRNW 570
WV+ +EP +L +W TTS TG++W
Sbjct: 913 WVYEWQEPQWYAQLYAQWQTTSSWTGQSW 941
>12_02_0078 +
13290432-13290924,13290998-13291201,13291290-13292024,
13292108-13292499
Length = 607
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 487 WVWRGKEPCSRCRLIGRW-TTSPTTGRNW 570
WV+ +EP +L +W TTS TG+ W
Sbjct: 549 WVYEWQEPQWYAQLYAQWQTTSSWTGQRW 577
>12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 593 LGLLARRIQFLPVVGLVVHLPIRRQREHGSFPRHTHTPEMVELLSSPNRQTDAK 432
LG L ++G + R + ++GS P TH +++LL R DA+
Sbjct: 910 LGALVAAYADAGMLGKATEMCERVREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 963
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -3
Query: 593 LGLLARRIQFLPVVGLVVHLPIRRQREHGSFPRHTHTPEMVELLSSPNRQTDAK 432
LG L ++G + R + ++GS P TH +++LL R DA+
Sbjct: 359 LGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 412
>07_01_0481 -
3621798-3621926,3622572-3622660,3622780-3622933,
3624104-3624111,3625522-3625547,3625757-3625881
Length = 176
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
+P T V + PN D CL IL N W+
Sbjct: 87 YPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 121
>01_07_0112 - 41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 27.9 bits (59), Expect = 8.7
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Frame = -3
Query: 686 LSAFT*ISCPWLNFLPS--LSVPFHEEVVLDKFLGLLARRIQFLPVVGLVVHLPIRRQRE 513
L F I CP L FLPS ++ E+ LD GL + LP GL +H+P++R
Sbjct: 1706 LEEFIIIDCPKLTFLPSSMKNLTAITELRLDGCKGL-----EILP-EGLGLHIPLKR-FV 1758
Query: 512 HGSFPRHTHTPEMVELLSS 456
P T PE++ L++
Sbjct: 1759 INDCPMLTFLPELLGHLTA 1777
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 459 RQQFHHLRSVGVARKGAVFPLSSDWQ 536
RQQFHHLR + R G L S W+
Sbjct: 283 RQQFHHLRPIS-RRLGEAHGLLSSWR 307
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,167,879
Number of Sequences: 37544
Number of extensions: 443867
Number of successful extensions: 1345
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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