Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30245
         (727 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)                 108   5e-24
SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 39   0.004
SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)                   30   2.2  
SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)               29   2.9  
SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)                    28   6.7  
SB_52860| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)                28   8.9  

>SB_41219| Best HMM Match : EF1G (HMM E-Value=3.3e-38)
          Length = 90

 Score =  108 bits (259), Expect = 5e-24
 Identities = 46/79 (58%), Positives = 62/79 (78%), Gaps = 3/79 (3%)
 Frame = +1

Query: 256 YSNED-EAKSIPYFWEKFDPENYSIWYAEYK--YPEELAKVFMSCNLITGMFQRLDKMRK 426
           YSNED E+K+IPYFWE FD E YS+W+ EYK  Y ++L  VFM+CNL+ GM QRL+K+ K
Sbjct: 12  YSNEDTESKAIPYFWENFDKEGYSLWFLEYKEEYEKDLGMVFMACNLVGGMIQRLEKLVK 71

Query: 427 QAFASVCLFGEDNNSTISG 483
             F S+C+FGE++N +I+G
Sbjct: 72  NGFGSICIFGENHNCSIAG 90


>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 519 LSSDWQVDYESYDWKKLDPSSEETKKLVQDYF 614
           L+ DW VD  SY  ++L+P     KKL++DYF
Sbjct: 152 LNEDWNVDAPSYTSRRLNPDDPADKKLIEDYF 183


>SB_3188| Best HMM Match : Hyd_WA (HMM E-Value=2e-13)
          Length = 1389

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 457  EDNNSTISGVWVWRGKEPCSRCRLIGRWTTSPTTGRNWILRAR 585
            ED++  IS VW+    EP S CR + + + SP     W L  R
Sbjct: 1191 EDSDPKISQVWLQVDGEPLSNCRFV-KVSVSPDDAVVWALDDR 1232


>SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)
          Length = 246

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 501 SAPHPHSGDGGIVVFTKQADGCESLFAHF 415
           S PHP  GDGG ++   + +G E  ++ F
Sbjct: 138 SRPHPRQGDGGKLLIEDELNGVEYSYSFF 166


>SB_16952| Best HMM Match : AAA_5 (HMM E-Value=0.47)
          Length = 1345

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
 Frame = -3

Query: 518 REHGSFPRHTHT-----PEMVELLSSPNRQTDAKACL 423
           REHG+ PRH  T     P+   LLS+P++ T+  A L
Sbjct: 663 REHGTEPRHGSTTGLPRPDCDGLLSAPDKCTERAASL 699


>SB_52860| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 445 CLFGEDNNSTISGVWVWRGKEPCSRC 522
           C FGE N  T   V VW  +   +RC
Sbjct: 53  CAFGETNPDTFESVLVWTTRSRRTRC 78


>SB_28074| Best HMM Match : Helicase_C (HMM E-Value=4.2)
          Length = 366

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +1

Query: 307 DPENYS----IWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFA 438
           DP+NY+    +W  E +Y   + + F S +L     Q +D    +AFA
Sbjct: 248 DPDNYNPDQVVWRVELRYHHSIIQQFASGSLDVRTGQAIDTRSFEAFA 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,684,724
Number of Sequences: 59808
Number of extensions: 499651
Number of successful extensions: 1346
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)