Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30245
(727 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical p... 142 2e-34
Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical pr... 142 2e-34
Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical pr... 142 2e-34
AF016670-7|AAB66102.3| 361|Caenorhabditis elegans Hypothetical ... 32 0.48
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 30 1.5
Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical pr... 29 2.6
U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein. 29 2.6
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 28 7.8
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 28 7.8
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 28 7.8
>Z72507-15|CAJ55245.1| 365|Caenorhabditis elegans Hypothetical
protein F17C11.9c protein.
Length = 365
Score = 142 bits (345), Expect = 2e-34
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Frame = +1
Query: 244 FQACYSNEDEA-KSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKM 420
F+ YSNED A K+IP+FWE FD +N+SIW EYKYPE+L FMSCNLI GM+QRL+K+
Sbjct: 223 FKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKL 282
Query: 421 RKQAFASVCLFGEDNNSTISGVWVWRGKEPCSRCRLIGRWTTSPTTGRNWILRARRPRNL 600
+K AFAS+ LFG DNNSTISG+WVW+G + + T ++ +
Sbjct: 283 KKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKE 342
Query: 601 SRTTSSWNGTDKDGRKFNQGQ 663
W G D G+KFNQG+
Sbjct: 343 VNEYLMWEG-DFGGKKFNQGK 362
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 206 FDSMPKGTFNMDDFKRA 256
F MPKGTF +D+FKR+
Sbjct: 210 FQDMPKGTFVLDNFKRS 226
>Z72507-7|CAD56569.1| 373|Caenorhabditis elegans Hypothetical
protein F17C11.9b protein.
Length = 373
Score = 142 bits (345), Expect = 2e-34
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Frame = +1
Query: 244 FQACYSNEDEA-KSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKM 420
F+ YSNED A K+IP+FWE FD +N+SIW EYKYPE+L FMSCNLI GM+QRL+K+
Sbjct: 231 FKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKL 290
Query: 421 RKQAFASVCLFGEDNNSTISGVWVWRGKEPCSRCRLIGRWTTSPTTGRNWILRARRPRNL 600
+K AFAS+ LFG DNNSTISG+WVW+G + + T ++ +
Sbjct: 291 KKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKE 350
Query: 601 SRTTSSWNGTDKDGRKFNQGQ 663
W G D G+KFNQG+
Sbjct: 351 VNEYLMWEG-DFGGKKFNQGK 370
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 206 FDSMPKGTFNMDDFKRA 256
F MPKGTF +D+FKR+
Sbjct: 218 FQDMPKGTFVLDNFKRS 234
>Z72507-6|CAA96631.1| 398|Caenorhabditis elegans Hypothetical
protein F17C11.9a protein.
Length = 398
Score = 142 bits (345), Expect = 2e-34
Identities = 69/141 (48%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Frame = +1
Query: 244 FQACYSNEDEA-KSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKM 420
F+ YSNED A K+IP+FWE FD +N+SIW EYKYPE+L FMSCNLI GM+QRL+K+
Sbjct: 256 FKRSYSNEDTATKAIPHFWENFDADNWSIWKCEYKYPEDLTLAFMSCNLINGMYQRLEKL 315
Query: 421 RKQAFASVCLFGEDNNSTISGVWVWRGKEPCSRCRLIGRWTTSPTTGRNWILRARRPRNL 600
+K AFAS+ LFG DNNSTISG+WVW+G + + T ++ +
Sbjct: 316 KKNAFASMILFGTDNNSTISGIWVWKGDKLAFELSPDWQVDYESYTWTKLDAKSDATKKE 375
Query: 601 SRTTSSWNGTDKDGRKFNQGQ 663
W G D G+KFNQG+
Sbjct: 376 VNEYLMWEG-DFGGKKFNQGK 395
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +2
Query: 206 FDSMPKGTFNMDDFKRA 256
F MPKGTF +D+FKR+
Sbjct: 243 FQDMPKGTFVLDNFKRS 259
>AF016670-7|AAB66102.3| 361|Caenorhabditis elegans Hypothetical
protein K02F6.2 protein.
Length = 361
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/74 (24%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +1
Query: 262 NEDEAKSIPYFWEKFDPENYSIW-YAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFA 438
N+ + K P + KF PENY +W Y +E ++ ++S + ++ + +RK A
Sbjct: 49 NKFKGKKFPRKFPKFGPENYKVWCYVNELDKDETSEYYISRTEFSKLYAG-NVVRKVEDA 107
Query: 439 SVCLFGEDNNSTIS 480
+ + E+ N +++
Sbjct: 108 THIVLPENENGSVT 121
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 30.3 bits (65), Expect = 1.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 516 PLSSDWQVDYESYDWKKL 569
PL D QVD+++Y+W+KL
Sbjct: 2672 PLGPDGQVDFQNYEWQKL 2689
>Z71259-7|CAA95793.1| 423|Caenorhabditis elegans Hypothetical
protein F13G3.8 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
F H TP+++ LL N T C I+ +WN
Sbjct: 348 FCLHKFTPDIIILLKMINNHTGDIVCTEIVGRMWN 382
>U59210-1|AAB09669.1| 423|Caenorhabditis elegans EAT-5 protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
F H TP+++ LL N T C I+ +WN
Sbjct: 348 FCLHKFTPDIIILLKMINNHTGDIVCTEIVGRMWN 382
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +1
Query: 268 DEAKSIPYFWEKFDPENYSIWYAEY 342
D+ + +P WE+ D +NY +Y ++
Sbjct: 327 DDPRELPPGWEQVDDQNYGTFYVDH 351
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
+P T + + + PN D CL IL N W+
Sbjct: 63 YPNKPPTVKFISKMFHPNVYADGSICLDILQNRWS 97
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
+P T + + + PN D CL IL N W+
Sbjct: 63 YPNKPPTVKFISKMFHPNVYADGSICLDILQNRWS 97
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,515,879
Number of Sequences: 27780
Number of extensions: 356394
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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