Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30245
(727 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative / ... 75 6e-14
At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative / ... 75 6e-14
At1g02080.1 68414.m00130 transcriptional regulator-related conta... 33 0.25
At2g27090.1 68415.m03255 expressed protein contains Pfam domains... 30 1.4
At5g14940.1 68418.m01753 proton-dependent oligopeptide transport... 30 1.8
At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N domain-... 29 2.4
At1g02210.1 68414.m00157 regulator of shoot apical meristem-rela... 28 5.5
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)... 28 7.2
At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E... 28 7.2
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 28 7.2
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 28 7.2
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 28 7.2
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 28 7.2
At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E... 28 7.2
At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E... 28 7.2
At5g15630.1 68418.m01829 phytochelatin synthetase family protein... 27 9.6
At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 fam... 27 9.6
At2g31180.1 68415.m03807 myb family transcription factor (MYB14)... 27 9.6
>At1g57720.1 68414.m06549 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative similar to elongation factor 1B
gamma GI:3868758 from [Oryza sativa]
Length = 413
Score = 74.5 bits (175), Expect = 6e-14
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +1
Query: 280 SIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGE 459
+I FW+ +DPE YS+W+ +YKY +E F++ N + G QR+D RK +F + + G
Sbjct: 285 AIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGS 344
Query: 460 DNNSTISGVWVWRGKE 507
+ + G+W++RG E
Sbjct: 345 EGPFKVKGLWLFRGPE 360
>At1g09640.1 68414.m01081 elongation factor 1B-gamma, putative /
eEF-1B gamma, putative Similar to elongation factor
1-gamma (gb|EF1G_XENLA). ESTs
gb|T20564,gb|T45940,gb|T04527 come from this gene
Length = 414
Score = 74.5 bits (175), Expect = 6e-14
Identities = 28/76 (36%), Positives = 47/76 (61%)
Frame = +1
Query: 280 SIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKMRKQAFASVCLFGE 459
+I FW+ +DPE YS+W+ +YKY +E F++ N + G QR+D RK +F + + G
Sbjct: 286 AIKGFWDMYDPEGYSLWFCDYKYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGS 345
Query: 460 DNNSTISGVWVWRGKE 507
+ + G+W++RG E
Sbjct: 346 EGPFKVKGLWLFRGPE 361
>At1g02080.1 68414.m00130 transcriptional regulator-related contains
Pfam PF04054: CCR4-Not complex component, Not1; contains
TIGRFAM TIGR01612: reticulocyte binding protein; similar
to General negative regulator of transcription subunit 1
(SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
gb|T44328 and gb|AA395265
Length = 2378
Score = 32.7 bits (71), Expect = 0.25
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +1
Query: 310 PENYSIWYAEYKYPEELAKVFMSCNLITGMFQRLDKM-RKQAFASVCLFGEDNNSTISGV 486
P+ Y W+A+Y + + + N + LDK+ K F + +N + G
Sbjct: 977 PQQYYPWFAQYMV---MKRASIEPNFHDLYLKFLDKVDSKLLFKEILQNTYENCKVLLGS 1033
Query: 487 WVWRGK-EPCSRCRLIGRWTTSPTTGRNWILRARR--PRNL 600
+ + E S + +G W T GRN++LRAR P++L
Sbjct: 1034 ELIKSSSEERSLLKNLGSWLGRLTIGRNYVLRAREIDPKSL 1074
>At2g27090.1 68415.m03255 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 743
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/88 (21%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 244 FQACYSNEDEAKSIPYFWEKFDPENYSIWYAEYKYPEELAKVFMSCNLITGM-FQRLDKM 420
F+ C S ++ K +P +P S+ Y + + E ++ S N + GM ++++
Sbjct: 358 FKTCLSCGEDPKDVPE-----EPAQNSVKYLTW-HRTESSRSSSSRNPLGGMNSDDVEEL 411
Query: 421 RKQAFASVCLFGEDNNSTISGVWVWRGK 504
F ++C+ + ST+ ++ W K
Sbjct: 412 NSNLFENICMIAGSHASTLDRLYAWERK 439
>At5g14940.1 68418.m01753 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 552
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = -2
Query: 396 TRNKVTAHEHLSEFLRVFVFGIPNGIVLGVKLLPEVRNRFSFVFVGVARLKSSML 232
+ NK ++F + + FG+ G +LGV ++ +++ F +V +G A +SML
Sbjct: 156 SENKEVKSNRKTQFFQWWYFGVCAGSLLGVTVMAYIQDTFGWV-IGFAIPTASML 209
>At2g33010.1 68415.m04045 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 649
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 254 ATPTKTKLNLFLTSGRSLTPRTIPFGMPNT-NTLRNSL 364
A PT L ++L G S+TP IPF T +RN++
Sbjct: 565 AAPTTITLTIYLDDGGSVTPVYIPFRSDQTVRDIRNAI 602
>At1g02210.1 68414.m00157 regulator of shoot apical meristem-related
contains weak similarity to no apical meristem NAM
(GI:1279640) [Petunia x hybrida]
Length = 87
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +1
Query: 433 FASVCLFGEDNNSTISGVWVWRGKEPCSRCRLIGRWTTS--PTTGRNWILRARRPRNLSR 606
F S + E+ T SG W KE S +IG+W TS G +L + N++
Sbjct: 5 FFSCDEYNEEILKTNSGYW----KETVSNTPIIGKWITSNGVKIGEKQVLVFQSYENING 60
Query: 607 TTSSW 621
+ S W
Sbjct: 61 SKSDW 65
>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
identical to myb-like protein GB:AJ007289 [Arabidopsis
thaliana] (Plant J. 20 (1), 57-66 (1999))
Length = 323
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -3
Query: 209 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSCSV---HQLTPG 60
++GPWTP QE P +W A+ +T L C SC + + L PG
Sbjct: 13 KKGPWTPEEDIILVTYIQEH-GPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPG 64
>At2g02760.1 68415.m00219 ubiquitin-conjugating enzyme 2 (UBC2) E2;
identical to gi:2689242, SP:P42745
Length = 152
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
+P T V + PN D CL IL N W+
Sbjct: 63 YPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 535 RWTTSPTTGRNWILRARRPRNLSRTTSSWNGTDKDGRKFNQGQDIQVNAD 684
+WT SP W R W+G GRK G+D ++ D
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDFVMSVD 1656
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 535 RWTTSPTTGRNWILRARRPRNLSRTTSSWNGTDKDGRKFNQGQDIQVNAD 684
+WT SP W R W+G GRK G+D ++ D
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDFVMSVD 1656
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 535 RWTTSPTTGRNWILRARRPRNLSRTTSSWNGTDKDGRKFNQGQDIQVNAD 684
+WT SP W R W+G GRK G+D ++ D
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDFVMSVD 1656
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +1
Query: 535 RWTTSPTTGRNWILRARRPRNLSRTTSSWNGTDKDGRKFNQGQDIQVNAD 684
+WT SP W R W+G GRK G+D ++ D
Sbjct: 1607 QWTDSPPRVDGWDSDPADVDLYDRDDVDWDGQYSSGRKRRSGRDFVMSVD 1656
>At1g14400.2 68414.m01708 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
+P T V + PN D CL IL N W+
Sbjct: 63 YPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At1g14400.1 68414.m01707 ubiquitin-conjugating enzyme 1 (UBC1) E2;
identical to gi:431259, SP:P25865
Length = 152
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = -3
Query: 503 FPRHTHTPEMVELLSSPNRQTDAKACLRILSNLWN 399
+P T V + PN D CL IL N W+
Sbjct: 63 YPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWS 97
>At5g15630.1 68418.m01829 phytochelatin synthetase family protein /
COBRA cell expansion protein COBL4 similar to
phytochelatin synthetase [Hordeum vulgare subsp.
vulgare] GI:29570314; identified in Roudier, et al,
Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
Pfam profile PF04833: Phytochelatin synthetase-like
conserved region
Length = 431
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 5/27 (18%)
Frame = +2
Query: 437 HPSACL-----VKTTIPPSPECGCGAE 502
HPS C+ TI P P C CG E
Sbjct: 214 HPSCCVSFSSFYNDTITPCPSCACGCE 240
>At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 745
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -2
Query: 405 LEHTRNKVTAHEHLSEFLRVFVFGIPNGIVLGVKLLPEVRN 283
+ H R K+ HL F F FG +++ + L+ RN
Sbjct: 327 MSHLRPKINKERHLITFSTGFFFGCGISLIVALGLIIHARN 367
>At2g31180.1 68415.m03807 myb family transcription factor (MYB14)
similar to myb-related transcription factor GI:1370140
from [Lycopersicon esculentum]
Length = 249
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -3
Query: 209 RRGPWTP*AFQAPPLQGQEQLPPSSWVALSFHTSYLFCPPSC 84
+RGPWTP Q + S+W AL H L C SC
Sbjct: 13 KRGPWTPEEDQIL-INYIHLYGHSNWRALPKHAGLLRCGKSC 53
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,764,221
Number of Sequences: 28952
Number of extensions: 339363
Number of successful extensions: 965
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -