Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30244
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    28   1.6  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    26   6.6  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +2

Query: 17  YNVSIKVVYVFFYVGTIR*KVLFI*NIKYLDQKYYRMQIHVAIITGTANMTLVS**VYFK 196
           Y +   +++     GT    VL I  I YL  K  +  I   ++T T ++++V    YF 
Sbjct: 154 YRLCFSLLFALLVYGTGVIYVLTIALINYLISKSLKNSIFNPLLTWTLDISVVFFKEYFA 213

Query: 197 FCVF 208
           +C F
Sbjct: 214 YCKF 217


>SPAPB1A10.07c |||sphingolipid biosynthesis
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 6  IIYSITSVLKWCMYSS 53
          ++Y + S+L WCM SS
Sbjct: 49 VLYFVNSLLSWCMLSS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,941,156
Number of Sequences: 5004
Number of extensions: 60547
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)