Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30244
         (748 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638...    28   6.9  
10_07_0143 - 13355192-13356055,13356152-13356192,13358966-133593...    28   9.1  

>09_04_0365 -
           16962608-16963174,16963301-16963486,16963824-16963896,
           16964307-16964497,16964982-16965198,16965394-16965797,
           16966593-16966658,16966668-16966721,16966945-16967079,
           16967194-16967391,16967734-16967918,16968990-16969527
          Length = 937

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 729 ILNPVNLSKDVVPEEFGDCQWNTKS 655
           ++ P +   D+  E+FGDC WN  S
Sbjct: 432 MVKPSSKGGDLSSEDFGDCDWNELS 456


>10_07_0143 -
           13355192-13356055,13356152-13356192,13358966-13359333,
           13359506-13359583,13360818-13360963
          Length = 498

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
 Frame = +2

Query: 626 IGEIRKTELLDFVF----HWQSPNSSGTTSLDKLTGLS 727
           IGEIR + L+D+ +    H +S N S  +S+D LT LS
Sbjct: 292 IGEIRPSGLMDYAYASGSHGESANWSAASSMD-LTDLS 328


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,933
Number of Sequences: 37544
Number of extensions: 298183
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)